SMTL ID : 3lat.2 (1 other biounit)

Crystal structure of Staphylococcus peptidoglycan hydrolase AmiE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.1: 5 residues within 4Å: Chain A: D.176, H.177 Ligands: ZN.4, BU1.9, CL.11 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:H.177

7 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.60, H.165, D.179 Ligands: ZN.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.60, A:H.165, A:D.179, A:D.179, H2O.4 ZN.3: 4 residues within 4Å: Chain A: H.177, D.179 Ligands: ZN.2, BU1.9 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.177, H2O.4 ZN.4: 3 residues within 4Å: Chain A: D.176, H.177 Ligands: IMD.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.176, A:D.176 ZN.5: 2 residues within 4Å: Chain A: D.61, T.62 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.61, H2O.4 ZN.6: 2 residues within 4Å: Chain A: D.152, S.153 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.152, H2O.4, H2O.4, H2O.4, H2O.4, H2O.4 ZN.7: 3 residues within 4Å: Chain A: D.65, H.124 Ligands: ZN.8 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.65 ZN.8: 2 residues within 4Å: Chain A: H.124 Ligands: ZN.7 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.124

2 x BU1: 1,4-BUTANEDIOL(Non-functional Binders)

BU1.9: 4 residues within 4Å: Chain A: A.63, H.177 Ligands: IMD.1, ZN.3 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.63 BU1.10: 5 residues within 4Å: Chain A: N.64, S.67, G.71, E.72, F.75 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.75, A:F.75 Water bridges: A:A.63

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.11: 2 residues within 4Å: Chain A: A.178 Ligands: IMD.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zoll, S. et al., Structural basis of cell wall cleavage by a staphylococcal autolysin. Plos Pathog. (2010)

Release Date

2010-03-23

Peptides

Bifunctional autolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bifunctional autolysin

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