SMTL ID : 3lc3.2 (1 other biounit)

Benzothiophene Inhibitors of Factor IXa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-oligomer

Ligands

2 x IYX: 1-[5-(3,4-DIMETHOXYPHENYL)-1-BENZOTHIOPHEN-2-YL]METHANEDIAMINE(Non-covalent)

IYX.1: 15 residues within 4Å: Chain A: H.41, Y.86, D.179, S.180, C.181, Q.182, S.185, S.204, W.205, G.206, E.207, E.208, C.209, G.216 Ligands: IYX.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.180, A:E.207 Water bridges: A:S.180, A:E.207 IYX.2: 10 residues within 4Å: Chain A: N.84, K.85, Y.86, H.135, F.162, W.205, G.206, E.207, E.208 Ligands: IYX.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.205 Hydrogen bonds: A:W.205 Water bridges: A:N.84, A:K.85, A:T.163 pi-Stacking: A:Y.86, A:F.162

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: E.55, N.57, E.60, E.62, E.65 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.55, A:N.57, A:E.62, A:E.65, H2O.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, S. et al., Studies of Benzothiophene Template as Potent Factor IXa (FIXa) Inhibitors in Thrombosis. J.Med.Chem. (2010)

Release Date

2010-02-23

Peptides

Coagulation factor IX: A
Coagulation factor IX: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Coagulation factor IX

Coagulation factor IX

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