SMTL ID : 3ld0.4 (3 other biounits)

Crystal structure of B.licheniformis Anti-TRAP protein, an antagonist of TRAP-RNA interactions

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-12-mer

Ligands

12 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.12, C.15, C.26, C.29 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.12, A:C.15, A:C.26, A:C.29 ZN.3: 4 residues within 4Å: Chain B: C.12, C.15, C.26, C.29 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.12, B:C.15, B:C.26, B:C.29 ZN.4: 4 residues within 4Å: Chain C: C.12, C.15, C.26, C.29 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.12, C:C.15, C:C.26, C:C.29 ZN.5: 5 residues within 4Å: Chain D: C.12, C.15, C.26, K.28, C.29 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.12, D:C.15, D:C.26, D:C.29 ZN.6: 4 residues within 4Å: Chain E: C.12, C.15, C.26, C.29 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.12, E:C.15, E:C.26, E:C.29 ZN.7: 4 residues within 4Å: Chain F: C.12, C.15, C.26, C.29 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.12, F:C.15, F:C.26, F:C.29 ZN.9: 4 residues within 4Å: Chain G: C.12, C.15, C.26, C.29 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.12, G:C.15, G:C.26, G:C.29 ZN.11: 4 residues within 4Å: Chain H: C.12, C.15, C.26, C.29 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.12, H:C.15, H:C.26, H:C.29 ZN.12: 4 residues within 4Å: Chain I: C.12, C.15, C.26, C.29 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.12, I:C.15, I:C.26, I:C.29 ZN.13: 4 residues within 4Å: Chain J: C.12, C.15, C.26, C.29 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.12, J:C.15, J:C.26, J:C.29 ZN.15: 4 residues within 4Å: Chain K: C.12, C.15, C.26, C.29 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.12, K:C.15, K:C.26, K:C.29 ZN.16: 4 residues within 4Å: Chain L: C.12, C.15, C.26, C.29 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.12, L:C.15, L:C.26, L:C.29

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: E.53 Chain B: E.53 Chain C: E.53 5 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: A:E.53, B:E.53, C:E.53, C:E.53, H2O.1 MG.8: 5 residues within 4Å: Chain D: I.51, E.53 Chain E: E.53 Chain F: I.51, E.53 5 PLIP interactions: 1 interactions with chain D, 2 interactions with chain F, 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: D:E.53, F:E.53, F:E.53, E:E.53, H2O.4 MG.10: 4 residues within 4Å: Chain G: E.53 Chain H: I.51, E.53 Chain I: E.53 5 PLIP interactions: 2 interactions with chain I, 1 interactions with chain G, 1 interactions with chain H, 1 Ligand-Water interactions Metal complexes: I:E.53, I:E.53, G:E.53, H:E.53, H2O.9 MG.14: 3 residues within 4Å: Chain J: E.53 Chain L: I.51, E.53 3 PLIP interactions: 1 interactions with chain L, 1 interactions with chain J, 1 Ligand-Water interactions Metal complexes: L:E.53, J:E.53, H2O.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shevtsov, M.B. et al., Bacillus licheniformis Anti-TRAP can assemble into two types of dodecameric particles with the same symmetry but inverted orientation of trimers. J.Struct.Biol. (2010)

Release Date

2010-02-23

Peptides

Inhibitor of TRAP, regulated by T-BOX (Trp) sequence RtpA: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
b

B
c

C
d

D
e

E
f

F
g

G
h

H
i

I
j

J
k

K
l

L
m

Inhibitor of TRAP, regulated by T-BOX (Trp) sequence RtpA

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