SMTL ID : 3lew.1

Crystal structure of SusD-like carbohydrate binding protein (YP_001298396.1) from Bacteroides vulgatus ATCC 8482 at 1.70 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

12 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 7 residues within 4Å: Chain A: A.231, K.232, D.233, N.234, Y.235 Ligands: 1PE.2, 1PE.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.234, A:N.234 1PE.2: 9 residues within 4Å: Chain A: N.234, L.236, Y.350, D.371, T.374, A.375 Ligands: 1PE.1, 1PE.3, 1PE.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.234 1PE.3: 7 residues within 4Å: Chain A: L.230, N.234, Y.350, K.368, D.371 Ligands: 1PE.1, 1PE.2 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.368 1PE.5: 7 residues within 4Å: Chain A: W.87, Y.91, P.150, Y.152, S.475, E.476, A.479 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.475, A:E.476, A:E.476 Water bridges: A:E.476 1PE.6: 3 residues within 4Å: Chain A: N.422, A.423, F.453 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.423 Water bridges: A:A.423 1PE.7: 8 residues within 4Å: Chain A: L.185, E.186, I.188, P.189, E.190, N.202, K.228, K.232 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.202, A:K.232 Water bridges: A:E.186, A:E.190, A:K.228 1PE.8: 3 residues within 4Å: Chain A: Y.291, Y.424, P.425 No protein-ligand interaction detected (PLIP) 1PE.9: 6 residues within 4Å: Chain A: I.140, D.141, P.144, A.216, R.217, Q.218 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.140, A:Q.218 Water bridges: A:R.217 1PE.10: 1 residues within 4Å: Chain A: N.367 No protein-ligand interaction detected (PLIP) 1PE.11: 4 residues within 4Å: Chain A: T.374, A.375, G.377 Ligands: 1PE.2 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.377 1PE.12: 4 residues within 4Å: Chain A: T.36, F.37, N.38, L.88 No protein-ligand interaction detected (PLIP) 1PE.13: 2 residues within 4Å: Chain A: N.179, E.182 No protein-ligand interaction detected (PLIP)

1 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.4: 5 residues within 4Å: Chain A: R.194, A.196, K.197, D.250, K.252 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.194, A:K.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of SusD-like carbohydrate binding protein (YP_001298396.1) from Bacteroides vulgatus ATCC 8482 at 1.70 A resolution. To be published

Release Date

2010-02-09

Peptides

SusD-like carbohydrate binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SusD-like carbohydrate binding protein