SMTL ID : 3lg7.1

Crystal structure of HIV epitope-scaffold 4E10_S0_1EZ3A_002_C

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-trimer

Ligands

11 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: K.90, R.94 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.90 Salt bridges: A:K.90, A:R.94 SO4.2: 2 residues within 4Å: Chain A: K.119, R.120 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.119, A:R.120, A:K.123 SO4.3: 4 residues within 4Å: Chain A: S.85, K.90, K.93, R.94 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.85 Salt bridges: A:K.90, A:K.93, A:R.94 SO4.4: 5 residues within 4Å: Chain A: R.2, E.79, S.86, L.89, R.92 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.86, A:L.89 Salt bridges: A:R.2, A:R.92 SO4.5: 2 residues within 4Å: Chain B: K.90, R.94 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.90, B:R.94 SO4.6: 3 residues within 4Å: Chain B: K.119, R.120, K.123 4 PLIP interactions: 4 interactions with chain B Water bridges: B:R.120 Salt bridges: B:K.119, B:R.120, B:K.123 SO4.7: 5 residues within 4Å: Chain B: E.80, S.85, K.90, K.93, R.94 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.80, B:S.85 Salt bridges: B:K.90, B:K.93, B:R.94 SO4.8: 6 residues within 4Å: Chain B: R.2, E.79, S.86, D.88, L.89, R.92 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.86, B:S.86 Salt bridges: B:R.92 SO4.9: 3 residues within 4Å: Chain C: K.90, R.94 Ligands: SO4.11 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:K.90, C:R.94 SO4.10: 3 residues within 4Å: Chain C: K.119, R.120, K.123 3 PLIP interactions: 3 interactions with chain C Salt bridges: C:K.119, C:R.120, C:K.123 SO4.11: 5 residues within 4Å: Chain C: S.85, K.90, K.93, R.94 Ligands: SO4.9 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.85 Salt bridges: C:K.90, C:R.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Correia, B.E. et al., Computational Design of Epitope-Scaffolds Allows Induction of Antibodies Specific for a Poorly Immunogenic HIV Vaccine Epitope. Structure (2010)

Release Date

2010-09-22

Peptides

4E10_S0_1EZ3A_002_C (T246): ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

4E10_S0_1EZ3A_002_C (T246)