SMTL ID : 3ll5.1 (1 other biounit)

Crystal structure of T. acidophilum isopentenyl phosphate kinase product complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

homo-dimer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain A: K.9, G.11, G.12, S.13, K.18, T.167, D.168, V.169, G.171, I.172, Y.173, K.175, D.176, P.177, K.178, I.206, K.209 Ligands: IPE.2 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.13, A:S.13, A:T.167, A:D.168, A:Y.173, A:Y.173, A:K.178 Water bridges: A:K.9, A:K.178 Salt bridges: A:K.9, A:K.18, A:K.18, A:K.209, A:K.209

1 x IPE: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)

IPE.2: 14 residues within 4Å: Chain A: K.9, G.11, G.12, K.18, G.48, G.49, G.50, G.53, H.54, G.132, D.133, S.146, G.147 Ligands: ADP.1 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.12, A:G.49, A:G.50, A:G.147 Water bridges: A:K.9, A:K.9 Salt bridges: A:K.9, A:K.9, A:K.18, A:H.54, A:H.54

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.3: 21 residues within 4Å: Chain B: K.9, G.11, G.12, S.13, G.48, G.50, H.54, T.167, D.168, V.169, G.171, I.172, Y.173, K.175, D.176, P.177, K.178, G.205, I.206, K.209 Ligands: IP8.4 21 PLIP interactions: 21 interactions with chain B Hydrogen bonds: B:G.12, B:S.13, B:S.13, B:G.49, B:G.50, B:D.168, B:Y.173, B:Y.173, B:K.178, B:G.205, B:I.206 Water bridges: B:K.9, B:S.51, B:K.209, B:K.209 Salt bridges: B:K.9, B:K.9, B:H.54, B:K.209, B:K.209, B:K.209

1 x IP8: Isopentenyl phosphate(Non-covalent)

IP8.4: 11 residues within 4Å: Chain B: K.9, G.48, G.49, G.50, G.53, H.54, V.77, M.81, G.132, G.147 Ligands: ATP.3 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:V.77 Hydrogen bonds: B:G.49, B:G.50, B:G.147 Water bridges: B:K.9, B:S.146 Salt bridges: B:K.9, B:H.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mabanglo, M.F. et al., X-ray structures of isopentenyl phosphate kinase. Acs Chem.Biol. (2010)

Release Date

2010-06-02

Peptides

Gamma-glutamyl kinase related protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Gamma-glutamyl kinase related protein

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