SMTL ID : 3llc.1

Crystal structure of Putative hydrolase (YP_002548124.1) from Agrobacterium vitis S4 at 1.80 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: T.53, K.54 Ligand excluded by PLIP

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: Q.125, V.198, G.201, M.202, I.203 Ligands: EDO.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.125, A:G.201 EDO.3: 5 residues within 4Å: Chain A: R.122, Q.125, A.195, R.197 Ligands: EDO.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.125, A:Q.125, A:A.195 Water bridges: A:R.122 EDO.4: 7 residues within 4Å: Chain A: I.124, L.127, K.128, N.133, T.135, Q.136, V.137 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.133, A:V.137, A:V.137 EDO.5: 4 residues within 4Å: Chain A: V.29, A.31, T.39, P.105 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.39 EDO.6: 2 residues within 4Å: Chain A: L.56, E.57 No protein-ligand interaction detected (PLIP)

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 3 residues within 4Å: Chain A: E.10, T.11, H.12 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.11 Water bridges: A:H.12

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.8: 7 residues within 4Å: Chain A: G.45, Y.46, S.114, M.115, F.149, E.174, D.219 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.46, A:E.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Putative hydrolase (YP_002548124.1) from Agrobacterium vitis S4 at 1.80 A resolution. To be published

Release Date

2010-03-23

Peptides

Putative hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative hydrolase