SMTL ID : 3lp0.1 (1 other biounit)

HIV-1 reverse transcriptase with inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

hetero-1-1-mer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: D.446, G.447, D.552 Ligands: MN.2, LP7.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.446, A:D.552 MN.2: 6 residues within 4Å: Chain A: D.446, G.447, E.481, D.501 Ligands: MN.1, LP7.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.446, A:E.481, A:D.501, A:D.501

1 x LP7: ethyl 1,4-dihydroxy-2-oxo-1,2-dihydro-1,8-naphthyridine-3-carboxylate(Non-covalent)

LP7.3: 8 residues within 4Å: Chain A: D.446, E.481, D.501, A.541, H.542, D.552 Ligands: MN.1, MN.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.541 Salt bridges: A:H.542

1 x NVP: 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE(Non-covalent)

NVP.4: 13 residues within 4Å: Chain A: L.103, K.104, V.109, V.182, Y.184, Y.191, G.193, F.230, W.232, L.237, H.238, P.239, Y.321 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.109, A:V.182, A:V.182, A:Y.184, A:Y.191, A:W.232, A:L.237, A:Y.321

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Su, H.P. et al., Structural basis for the inhibition of RNase H activity of HIV-1 reverse transcriptase by RNase H active site-directed inhibitors. J.Virol. (2010)

Release Date

2010-06-09

Peptides

Reverse transcriptase/ribonuclease H: A
p51 RT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reverse transcriptase/ribonuclease H

p51 RT

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