SMTL ID : 3lqi.2 (2 other biounits)

Crystal structure of MLL1 PHD3-Bromo complexed with H3(1-9)K4me2 peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

1 x ALA- ARG- THR- MLY- GLN- THR- ALA: Histone H3(Non-covalent)

ALA-ARG-THR-MLY-GLN-THR-ALA.1: 16 residues within 4Å: Chain A: Y.12, D.13, D.14, D.16, Y.17, S.19, M.21, M.22, Q.23, W.30, Y.43, E.44, L.46, S.47, P.50, V.53 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Y.17, A:W.30, A:Y.43, A:L.46 Hydrogen bonds: A:M.21, A:Q.23, A:Q.23, A:Y.43, A:Y.43, A:Y.43, A:E.44, A:S.47, A:V.53 Water bridges: A:Y.55 pi-Cation interactions: A:W.30, A:W.30

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.5, C.8, H.32, C.35 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.5, A:C.8, A:H.32, A:C.35 ZN.3: 4 residues within 4Å: Chain A: C.24, C.27, C.57, C.60 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.24, A:C.27, A:C.57, A:C.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Z. et al., Pro isomerization in MLL1 PHD3-bromo cassette connects H3K4me readout to CyP33 and HDAC-mediated repression. Cell(Cambridge,Mass.) (2010)

Release Date

2010-07-07

Peptides

MLL1 PHD3-Bromo: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

MLL1 PHD3-Bromo

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