SMTL ID : 3luc.2 (2 other biounits)

Crystal structure of MID domain from hAGO2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: Y.92, K.96, T.107, Q.108, C.109, K.133 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Y.92, A:T.107, A:Q.108, A:C.109, A:C.109 Water bridges: A:K.133, A:K.133 Salt bridges: A:K.96, A:K.133 PO4.2: 3 residues within 4Å: Chain A: R.38, K.39, R.42 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.38 Salt bridges: A:R.38, A:K.39, A:R.42 PO4.3: 4 residues within 4Å: Chain A: F.54, K.56, H.70, Y.75 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.75, A:Y.75 Water bridges: A:Y.75, A:Y.75 Salt bridges: A:K.56, A:H.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frank, F. et al., Structural basis for 5'-nucleotide base-specific recognition of guide RNA by human AGO2. Nature (2010)

Release Date

2010-05-26

Peptides

Protein argonaute-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Protein argonaute-2

Related Entries With Identical Sequence