SMTL ID : 3luf.1

Structure of probable two-component system response regulator/GGDEF domain protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-dimer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.132, D.176, Y.178 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.132, A:D.176, A:Y.178, H2O.4, H2O.4, H2O.4 MG.2: 4 residues within 4Å: Chain A: E.11, D.12, D.55, T.57 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.12, A:D.55, A:T.57, A:T.57, H2O.3, H2O.4 MG.4: 3 residues within 4Å: Chain B: D.132, D.176, Y.178 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.132, B:D.176, B:Y.178, H2O.5, H2O.6, H2O.7 MG.5: 4 residues within 4Å: Chain B: E.11, D.12, D.55, T.57 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.12, B:D.55, B:T.57, B:T.57, H2O.4, H2O.4

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 4 residues within 4Å: Chain A: R.17, A.34, F.35, D.36 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.36 Water bridges: A:T.37 Salt bridges: A:D.36 DMS.6: 4 residues within 4Å: Chain B: Q.5, G.29, L.30, E.31 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:E.31 DMS.7: 4 residues within 4Å: Chain B: E.181, I.182, D.183, S.186 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.183, B:S.186 Salt bridges: B:D.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramagopal, U.A. et al., Structure of probable two-component system response regulator/GGDEF domain protein. To be published

Release Date

2010-03-02

Peptides

Two-component system response regulator/GGDEF domain protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Two-component system response regulator/GGDEF domain protein

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