SMTL ID : 3luj.2 (2 other biounits)

Crystal structure of MID domain from hAGO2 in complex with UMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x U5P: URIDINE-5'-MONOPHOSPHATE(Non-covalent)

U5P.1: 12 residues within 4Å: Chain A: L.85, G.87, K.88, T.89, Y.92, K.96, T.107, Q.108, C.109, Q.111, K.129, K.133 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Y.92 Hydrogen bonds: A:G.87, A:G.87, A:T.89, A:Y.92, A:Q.108, A:C.109 Water bridges: A:K.88, A:Y.92, A:Y.92, A:Q.111, A:K.129, A:K.129, A:K.133, A:K.133, A:K.133 Salt bridges: A:K.96, A:K.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frank, F. et al., Structural basis for 5'-nucleotide base-specific recognition of guide RNA by human AGO2. Nature (2010)

Release Date

2010-05-26

Peptides

Protein argonaute-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Protein argonaute-2

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