SMTL ID : 3lvu.2 (3 other biounits)

Crystal structure of ABC transporter, periplasmic substrate-binding protein SPO2066 from Silicibacter pomeroyi

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

4 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 1 residues within 4Å: Chain A: D.55 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain A: R.185 Ligand excluded by PLIP IOD.3: 3 residues within 4Å: Chain A: D.165, N.166, A.167 Ligand excluded by PLIP IOD.4: 1 residues within 4Å: Chain A: L.101 Ligand excluded by PLIP

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 3 residues within 4Å: Chain A: R.13, A.204, G.205 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.13 EDO.6: 5 residues within 4Å: Chain A: T.6, P.182, F.183, R.184, R.258 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.182, A:F.183, A:R.258 EDO.10: 6 residues within 4Å: Chain A: S.64, G.65, R.66, E.67, A.238, R.241 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.66, A:E.67, A:R.241 Water bridges: A:S.64 EDO.11: 4 residues within 4Å: Chain A: R.135, Y.169, T.170, V.173 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.135, A:R.135 Water bridges: A:T.170

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 6 residues within 4Å: Chain A: G.122, D.124, A.126, P.127, L.128, A.129 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.126, A:A.129, A:A.129

2 x PG5: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE(Non-covalent)

PG5.8: 5 residues within 4Å: Chain A: P.73, F.74, A.222, R.226 Ligands: PG5.9 No protein-ligand interaction detected (PLIP) PG5.9: 4 residues within 4Å: Chain A: P.73, F.74, A.222 Ligands: PG5.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, C. et al., Crystal structure of ABC transporter, periplasmic substrate-binding protein SPO2066 from Silicibacter pomeroyi. To be Published

Release Date

2010-03-02

Peptides

ABC transporter, periplasmic substrate-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

ABC transporter, periplasmic substrate-binding protein

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