SMTL ID : 3lvx.3 (2 other biounits)

Crystal structure of human alpha-defensin 1 (I6A mutant)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

homo-48-mer

Ligands

48 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain 8: Q.22 Chain A: R.15 Ligand excluded by PLIP SO4.3: 6 residues within 4Å: Chain B: R.15, G.17, T.18 Chain W: R.15, G.17 Chain X: I.20 Ligand excluded by PLIP SO4.4: 2 residues within 4Å: Chain C: R.15 Chain c: Q.22 Ligand excluded by PLIP SO4.6: 6 residues within 4Å: Chain D: R.15, G.17, T.18 Chain Q: R.15, G.17 Chain R: I.20 Ligand excluded by PLIP SO4.7: 2 residues within 4Å: Chain E: R.15 Chain a: Q.22 Ligand excluded by PLIP SO4.9: 6 residues within 4Å: Chain F: R.15, G.17, T.18 Chain U: R.15, G.17 Chain V: I.20 Ligand excluded by PLIP SO4.10: 2 residues within 4Å: Chain 6: Q.22 Chain G: R.15 Ligand excluded by PLIP SO4.12: 6 residues within 4Å: Chain H: R.15, G.17, T.18 Chain S: R.15, G.17 Chain T: I.20 Ligand excluded by PLIP SO4.13: 2 residues within 4Å: Chain 0: Q.22 Chain I: R.15 Ligand excluded by PLIP SO4.15: 6 residues within 4Å: Chain J: R.15, G.17, T.18 Chain k: R.15, G.17 Chain l: I.20 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain 4: Q.22 Chain K: R.15 Ligand excluded by PLIP SO4.18: 6 residues within 4Å: Chain L: R.15, G.17, T.18 Chain e: R.15, G.17 Chain f: I.20 Ligand excluded by PLIP SO4.19: 2 residues within 4Å: Chain 2: Q.22 Chain M: R.15 Ligand excluded by PLIP SO4.21: 6 residues within 4Å: Chain N: R.15, G.17, T.18 Chain i: R.15, G.17 Chain j: I.20 Ligand excluded by PLIP SO4.22: 2 residues within 4Å: Chain O: R.15 Chain Y: Q.22 Ligand excluded by PLIP SO4.24: 6 residues within 4Å: Chain P: R.15, G.17, T.18 Chain g: R.15, G.17 Chain h: I.20 Ligand excluded by PLIP SO4.25: 2 residues within 4Å: Chain C: Q.22 Chain Q: R.15 Ligand excluded by PLIP SO4.27: 6 residues within 4Å: Chain R: R.15, G.17, T.18 Chain c: R.15, G.17 Chain d: I.20 Ligand excluded by PLIP SO4.28: 2 residues within 4Å: Chain G: Q.22 Chain S: R.15 Ligand excluded by PLIP SO4.30: 6 residues within 4Å: Chain 6: R.15, G.17 Chain 7: I.20 Chain T: R.15, G.17, T.18 Ligand excluded by PLIP SO4.31: 2 residues within 4Å: Chain E: Q.22 Chain U: R.15 Ligand excluded by PLIP SO4.33: 6 residues within 4Å: Chain V: R.15, G.17, T.18 Chain a: R.15, G.17 Chain b: I.20 Ligand excluded by PLIP SO4.34: 2 residues within 4Å: Chain A: Q.22 Chain W: R.15 Ligand excluded by PLIP SO4.36: 6 residues within 4Å: Chain 8: R.15, G.17 Chain 9: I.20 Chain X: R.15, G.17, T.18 Ligand excluded by PLIP SO4.37: 2 residues within 4Å: Chain Y: R.15 Chain g: Q.22 Ligand excluded by PLIP SO4.39: 6 residues within 4Å: Chain O: R.15, G.17 Chain P: I.20 Chain Z: R.15, G.17, T.18 Ligand excluded by PLIP SO4.40: 2 residues within 4Å: Chain 0: R.15 Chain k: Q.22 Ligand excluded by PLIP SO4.42: 6 residues within 4Å: Chain 1: R.15, G.17, T.18 Chain I: R.15, G.17 Chain J: I.20 Ligand excluded by PLIP SO4.43: 2 residues within 4Å: Chain 2: R.15 Chain i: Q.22 Ligand excluded by PLIP SO4.45: 6 residues within 4Å: Chain 3: R.15, G.17, T.18 Chain M: R.15, G.17 Chain N: I.20 Ligand excluded by PLIP SO4.46: 2 residues within 4Å: Chain 4: R.15 Chain e: Q.22 Ligand excluded by PLIP SO4.48: 6 residues within 4Å: Chain 5: R.15, G.17, T.18 Chain K: R.15, G.17 Chain L: I.20 Ligand excluded by PLIP SO4.49: 2 residues within 4Å: Chain 6: R.15 Chain S: Q.22 Ligand excluded by PLIP SO4.51: 6 residues within 4Å: Chain 7: R.15, G.17, T.18 Chain G: R.15, G.17 Chain H: I.20 Ligand excluded by PLIP SO4.52: 2 residues within 4Å: Chain 8: R.15 Chain W: Q.22 Ligand excluded by PLIP SO4.54: 6 residues within 4Å: Chain 9: R.15, G.17, T.18 Chain A: R.15, G.17 Chain B: I.20 Ligand excluded by PLIP SO4.55: 2 residues within 4Å: Chain U: Q.22 Chain a: R.15 Ligand excluded by PLIP SO4.57: 6 residues within 4Å: Chain E: R.15, G.17 Chain F: I.20 Chain b: R.15, G.17, T.18 Ligand excluded by PLIP SO4.58: 2 residues within 4Å: Chain Q: Q.22 Chain c: R.15 Ligand excluded by PLIP SO4.60: 6 residues within 4Å: Chain C: R.15, G.17 Chain D: I.20 Chain d: R.15, G.17, T.18 Ligand excluded by PLIP SO4.61: 2 residues within 4Å: Chain K: Q.22 Chain e: R.15 Ligand excluded by PLIP SO4.63: 6 residues within 4Å: Chain 4: R.15, G.17 Chain 5: I.20 Chain f: R.15, G.17, T.18 Ligand excluded by PLIP SO4.64: 2 residues within 4Å: Chain O: Q.22 Chain g: R.15 Ligand excluded by PLIP SO4.66: 6 residues within 4Å: Chain Y: R.15, G.17 Chain Z: I.20 Chain h: R.15, G.17, T.18 Ligand excluded by PLIP SO4.67: 2 residues within 4Å: Chain M: Q.22 Chain i: R.15 Ligand excluded by PLIP SO4.69: 6 residues within 4Å: Chain 2: R.15, G.17 Chain 3: I.20 Chain j: R.15, G.17, T.18 Ligand excluded by PLIP SO4.70: 2 residues within 4Å: Chain I: Q.22 Chain k: R.15 Ligand excluded by PLIP SO4.72: 6 residues within 4Å: Chain 0: R.15, G.17 Chain 1: I.20 Chain l: R.15, G.17, T.18 Ligand excluded by PLIP

24 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 1 residues within 4Å: Chain A: E.13 Ligand excluded by PLIP GOL.5: 1 residues within 4Å: Chain C: E.13 Ligand excluded by PLIP GOL.8: 1 residues within 4Å: Chain E: E.13 Ligand excluded by PLIP GOL.11: 1 residues within 4Å: Chain G: E.13 Ligand excluded by PLIP GOL.14: 1 residues within 4Å: Chain I: E.13 Ligand excluded by PLIP GOL.17: 1 residues within 4Å: Chain K: E.13 Ligand excluded by PLIP GOL.20: 1 residues within 4Å: Chain M: E.13 Ligand excluded by PLIP GOL.23: 1 residues within 4Å: Chain O: E.13 Ligand excluded by PLIP GOL.26: 1 residues within 4Å: Chain Q: E.13 Ligand excluded by PLIP GOL.29: 1 residues within 4Å: Chain S: E.13 Ligand excluded by PLIP GOL.32: 1 residues within 4Å: Chain U: E.13 Ligand excluded by PLIP GOL.35: 1 residues within 4Å: Chain W: E.13 Ligand excluded by PLIP GOL.38: 1 residues within 4Å: Chain Y: E.13 Ligand excluded by PLIP GOL.41: 1 residues within 4Å: Chain 0: E.13 Ligand excluded by PLIP GOL.44: 1 residues within 4Å: Chain 2: E.13 Ligand excluded by PLIP GOL.47: 1 residues within 4Å: Chain 4: E.13 Ligand excluded by PLIP GOL.50: 1 residues within 4Å: Chain 6: E.13 Ligand excluded by PLIP GOL.53: 1 residues within 4Å: Chain 8: E.13 Ligand excluded by PLIP GOL.56: 1 residues within 4Å: Chain a: E.13 Ligand excluded by PLIP GOL.59: 1 residues within 4Å: Chain c: E.13 Ligand excluded by PLIP GOL.62: 1 residues within 4Å: Chain e: E.13 Ligand excluded by PLIP GOL.65: 1 residues within 4Å: Chain g: E.13 Ligand excluded by PLIP GOL.68: 1 residues within 4Å: Chain i: E.13 Ligand excluded by PLIP GOL.71: 1 residues within 4Å: Chain k: E.13 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wei, G. et al., Trp-26 imparts functional versatility to human alpha-defensin HNP1. J.Biol.Chem. (2010)

Release Date

2010-03-09

Peptides

Neutrophil defensin 1: ABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789abcdefghijkl

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

I
A

J
B

K
A

L
B

M
A

N
B

O
A

P
B

Q
A

R
B

S
A

T
B

U
A

V
B

W
A

X
B

Y
A

Z
B

0
A

1
B

2
A

3
B

4
A

5
B

6
A

7
B

8
A

9
B

a
A

b
B

c
A

d
B

e
A

f
B

g
A

h
B

i
A

j
B

k
A

l
B

Neutrophil defensin 1

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