SMTL ID : 3lxc.1

Interconversion of Human Lysosomal Enzyme Specificities

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 6 residues within 4Å: Chain A: D.2, N.3, G.4, N.161, G.164, R.165 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.2 Water bridges: A:D.2 NAG-NAG-BMA-MAN.4: 6 residues within 4Å: Chain B: D.2, N.3, R.7, N.161, G.164, R.165 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.7, B:D.2 Water bridges: B:R.7

1 x NAG- NAG- BMA- MAN- FUC: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-FUC.2: 2 residues within 4Å: Chain A: N.184, T.186 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.186

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.3: 6 residues within 4Å: Chain B: N.108, F.118, Y.142, C.143, D.144, N.148 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 6 residues within 4Å: Chain A: N.108, F.118, Y.142, C.143, D.144, N.148 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.118, A:N.148 Hydrogen bonds: A:N.108, A:D.144, A:N.148 NAG.7: 2 residues within 4Å: Chain B: N.184, T.186 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.184

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 8 residues within 4Å: Chain A: W.16, D.61, D.62, Y.103, C.111, A.112, K.137, D.139 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.62, A:A.112, A:K.137, A:K.137 GOL.8: 8 residues within 4Å: Chain B: W.16, D.61, D.62, Y.103, C.111, K.137, D.139, D.200 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.62, B:D.62, B:A.112, B:K.137, B:K.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tomasic, I.B. et al., Interconversion of the specificities of human lysosomal enzymes associated with Fabry and Schindler diseases. J.Biol.Chem. (2010)

Release Date

2010-05-05

Peptides

Alpha-galactosidase A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alpha-galactosidase A

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