SMTL ID : 3lxy.1

Crystal structure of 4-hydroxythreonine-4-phosphate dehydrogenase from Yersinia pestis CO92

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 8 residues within 4Å: Chain A: H.215, A.216, E.218, G.219, E.226, I.231, G.246, P.247 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.219 Hydrogen bonds: A:P.247 GLC-FRU.4: 8 residues within 4Å: Chain B: H.215, A.216, E.218, G.219, E.226, I.231, G.246, P.247 1 PLIP interactions: 1 interactions with chain B Water bridges: B:G.219 Hydrogen bonds: B:P.247

2 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 3 residues within 4Å: Chain A: H.170, H.270 Chain B: H.215 6 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:H.170, A:H.270, B:H.215, H2O.1, H2O.6, H2O.6 NI.5: 3 residues within 4Å: Chain A: H.215 Chain B: H.170, H.270 6 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: B:H.170, B:H.270, A:H.215, H2O.8, H2O.13, H2O.13

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: G.139, H.140, T.141, E.142, N.287, R.296 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.140, A:T.141, A:T.141 Water bridges: A:T.122, A:S.298 Salt bridges: A:R.296 SO4.6: 6 residues within 4Å: Chain B: G.139, H.140, T.141, E.142, N.287, R.296 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:H.140, B:T.141, B:T.141, B:T.141, B:N.287 Water bridges: B:T.122, B:S.298 Salt bridges: B:R.296

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nocek, B. et al., Crystal structure of 4-hydroxythreonine-4-phosphate dehydrogenase from Yersinia pestis CO92. To be Published

Release Date

2010-03-09

Peptides

4-hydroxythreonine-4-phosphate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-hydroxythreonine-4-phosphate dehydrogenase