SMTL ID : 3m00.1

Crystal Structure of 5-epi-aristolochene synthase M4 mutant complexed with (2-cis,6-trans)-2-fluorofarnesyl diphosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x 2CF: (2E,6E)-2-fluoro-3,7,11-trimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate(Non-covalent)

2CF.1: 18 residues within 4Å: Chain A: R.266, I.296, I.299, S.300, D.303, D.307, T.403, T.404, T.405, C.442, R.443, D.446, E.454, I.518, Y.522 Ligands: MG.2, MG.3, MG.4 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.296, A:I.299, A:T.404, A:T.405, A:I.518, A:Y.522 Water bridges: A:D.307, A:E.381 Salt bridges: A:R.266 Halogen bonds: A:R.266

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.446, T.450, E.454 Ligands: 2CF.1 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.446, A:E.454, H2O.1, H2O.1, H2O.1 MG.3: 4 residues within 4Å: Chain A: D.303, D.307 Ligands: 2CF.1, MG.4 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.303, A:D.307, H2O.1, H2O.1, H2O.1 MG.4: 5 residues within 4Å: Chain A: D.303, D.307, E.381 Ligands: 2CF.1, MG.3 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.303, A:D.307, H2O.1, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Noel, J.P. et al., Structural elucidation of cisoid and transoid cyclization pathways of a sesquiterpene synthase using 2-fluorofarnesyl diphosphates. Acs Chem.Biol. (2010)

Release Date

2010-07-07

Peptides

Aristolochene synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aristolochene synthase

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