SMTL ID : 3m0l.1

Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329F in complex with D-psicose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

8 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: E.219, D.254, H.257, H.281, D.327 Ligands: PSJ.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.219, A:D.254, A:H.281, A:D.327 MN.2: 5 residues within 4Å: Chain A: K.221, D.254, H.257, D.289 Ligands: PSJ.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.257, A:D.289, H2O.12, H2O.12 MN.4: 6 residues within 4Å: Chain B: E.219, D.254, H.257, H.281, D.327 Ligands: PSJ.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.219, B:D.254, B:H.281, B:D.327 MN.5: 5 residues within 4Å: Chain B: K.221, D.254, H.257, D.289 Ligands: PSJ.6 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.257, B:D.289, H2O.19, H2O.23 MN.7: 6 residues within 4Å: Chain C: E.219, D.254, H.257, H.281, D.327 Ligands: PSJ.9 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.219, C:D.254, C:H.281, C:D.327 MN.8: 5 residues within 4Å: Chain C: K.221, D.254, H.257, D.289 Ligands: PSJ.9 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.257, C:D.289, H2O.33, H2O.33 MN.10: 5 residues within 4Å: Chain D: E.219, D.254, H.281, D.327 Ligands: PSJ.12 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.219, D:D.254, D:H.281, D:D.327 MN.11: 5 residues within 4Å: Chain D: K.221, D.254, H.257, D.289 Ligands: PSJ.12 4 PLIP interactions: 2 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.257, D:D.289, H2O.33, H2O.44

4 x PSJ: D-psicose(Non-covalent)

PSJ.3: 15 residues within 4Å: Chain A: W.57, H.101, W.104, W.179, E.219, K.221, D.254, H.257, H.281, D.289, D.327, F.329 Chain B: F.66 Ligands: MN.1, MN.2 1 PLIP interactions: 1 interactions with chain B Water bridges: B:R.65 PSJ.6: 15 residues within 4Å: Chain A: F.66 Chain B: W.57, H.101, W.104, W.179, E.219, K.221, D.254, H.257, H.281, D.289, D.327, F.329 Ligands: MN.4, MN.5 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.219 Water bridges: A:R.65 PSJ.9: 15 residues within 4Å: Chain C: W.57, H.101, W.104, W.179, E.219, K.221, D.254, H.257, H.281, D.289, D.327, F.329 Chain D: F.66 Ligands: MN.7, MN.8 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Water bridges: D:R.65 Hydrogen bonds: C:E.219 PSJ.12: 15 residues within 4Å: Chain C: F.66 Chain D: W.57, H.101, W.104, W.179, E.219, K.221, D.254, H.257, H.281, D.289, D.327, F.329 Ligands: MN.10, MN.11 1 PLIP interactions: 1 interactions with chain C Water bridges: C:R.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoshida, H. et al., Elucidation of the role of Ser329 and the C-terminal region in the catalytic activity of Pseudomonas stutzeri L-rhamnose isomerase. Protein Eng.Des.Sel. (2010)

Release Date

2010-11-10

Peptides

L-rhamnose isomerase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

L-rhamnose isomerase

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