SMTL ID : 3m1h.1 (3 other biounits)

Crystal Structure Analysis of the K3 Cleaved Adhesin Domain of Lys-gingipain (Kgp) from Porphyromonas gingivalis w83

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.22, D.24, D.26, N.28, N.66 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.22, A:D.24, A:D.26, A:N.28, H2O.3 CA.2: 5 residues within 4Å: Chain A: D.9, E.11, S.46, I.48, D.171 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.9, A:E.11, A:S.46, A:I.48, H2O.1

3 x NA: SODIUM ION(Non-functional Binders)

NA.3: 1 residues within 4Å: Chain A: N.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.7 Water bridges: A:D.9 NA.4: 1 residues within 4Å: Chain A: N.106 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.106 Water bridges: A:K.19, A:N.106, A:N.106 NA.5: 2 residues within 4Å: Chain A: A.16, W.18 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, N. et al., The modular structure of haemagglutinin/adhesin regions in gingipains of Porphyromonas gingivalis. Mol.Microbiol. (2011)

Release Date

2011-03-23

Peptides

Lysine specific cysteine protease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysine specific cysteine protease

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