SMTL ID : 3m41.1

Crystal structure of the mutant V182A of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: R.107, L.110, N.111 No protein-ligand interaction detected (PLIP) GOL.2: 7 residues within 4Å: Chain A: R.5, R.168, Q.173, S.175, R.194, F.195, D.197 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.168, A:S.175, A:A.196 Water bridges: A:Q.173, A:F.195 GOL.3: 8 residues within 4Å: Chain A: V.48, L.49, G.52, M.53 Chain B: V.48, L.49, G.52, M.53 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:L.49, B:M.53, A:M.53 Water bridges: B:D.54, B:D.54, A:D.54 GOL.4: 8 residues within 4Å: Chain B: R.5, R.168, Q.173, S.175, R.194, F.195, A.196, D.197 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.173, B:A.196, B:D.197 Water bridges: B:R.14 GOL.5: 3 residues within 4Å: Chain B: R.107, L.110, N.111 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wood, B.M. et al., Conformational changes in orotidine 5'-monophosphate decarboxylase: "remote" residues that stabilize the active conformation. Biochemistry (2010)

Release Date

2010-06-16

Peptides

Orotidine 5'-phosphate decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Orotidine 5'-phosphate decarboxylase

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