SMTL ID : 3m6a.1 (6 other biounits)

Crystal structure of Bacillus subtilis Lon C-terminal domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

homo-hexamer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: H.83, H.84, P.117, G.118, V.119, G.120, K.121, T.122, S.123, Y.253, I.261, L.266, K.269, V.301, E.305 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:H.84, A:G.118, A:V.119, A:G.120, A:K.121, A:T.122, A:T.122, A:S.123, A:Y.253, A:E.305 Salt bridges: A:K.121 ADP.2: 14 residues within 4Å: Chain B: H.83, H.84, P.116, P.117, G.118, V.119, G.120, K.121, T.122, S.123, Y.253, I.261, V.301, E.305 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:H.84, B:G.118, B:V.119, B:G.120, B:T.122, B:T.122, B:Y.253, B:Y.253 Salt bridges: B:K.121 pi-Cation interactions: B:H.83 ADP.3: 14 residues within 4Å: Chain C: E.82, H.83, H.84, G.118, V.119, G.120, K.121, T.122, S.123, Y.253, I.261, H.265, V.301, E.305 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:H.84, C:G.118, C:V.119, C:G.120, C:K.121, C:T.122, C:T.122, C:S.123, C:Y.253, C:Y.253, C:E.305 Salt bridges: C:K.121 pi-Cation interactions: C:H.83 ADP.4: 16 residues within 4Å: Chain D: E.82, H.83, H.84, P.116, P.117, G.118, V.119, G.120, K.121, T.122, S.123, Y.253, I.261, H.265, V.301, E.305 14 PLIP interactions: 14 interactions with chain D Hydrogen bonds: D:H.84, D:G.118, D:V.119, D:G.120, D:K.121, D:T.122, D:T.122, D:S.123, D:S.123, D:S.123, D:Y.253, D:Y.253 Salt bridges: D:K.121 pi-Stacking: D:H.83 ADP.5: 15 residues within 4Å: Chain E: E.82, H.83, H.84, P.117, G.118, V.119, G.120, K.121, T.122, S.123, Y.253, I.261, K.269, V.301, E.305 13 PLIP interactions: 13 interactions with chain E Hydrogen bonds: E:H.84, E:P.116, E:G.118, E:V.119, E:G.120, E:K.121, E:T.122, E:S.123, E:S.123, E:S.123, E:Y.253, E:K.269 Salt bridges: E:K.121 ADP.6: 15 residues within 4Å: Chain F: H.83, H.84, L.86, P.116, P.117, G.118, V.119, G.120, K.121, T.122, S.123, Y.253, I.261, V.301, E.305 12 PLIP interactions: 12 interactions with chain F Hydrogen bonds: F:H.84, F:G.118, F:V.119, F:G.120, F:K.121, F:T.122, F:S.123, F:Y.253, F:Y.253, F:E.305 Salt bridges: F:K.121 pi-Cation interactions: F:H.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Duman, R.E. et al., Crystal Structures of Bacillus subtilis Lon Protease. J.Mol.Biol. (2010)

Release Date

2010-06-30

Peptides

ATP-dependent protease La 1: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

ATP-dependent protease La 1

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