SMTL ID : 3m97.1

Structure of the soluble domain of cytochrome c552 with its flexible linker segment from Paracoccus denitrificans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.33 Å

Oligo State

monomer

Ligands

1 x HEC: HEME C(Covalent)

HEC.1: 25 residues within 4Å: Chain A: K.53, C.54, C.57, H.58, V.66, G.67, P.68, L.70, R.76, A.79, F.84, Y.86, S.87, M.90, W.97, L.102, F.105, L.106, T.116, K.117, M.118, A.119, F.120, L.123, L.132 25 PLIP interactions: 25 interactions with chain A, Hydrophobic interactions: A:V.66, A:P.68, A:L.70, A:L.70, A:F.84, A:W.97, A:L.102, A:L.106, A:M.118, A:F.120, A:F.120, A:L.123 Hydrogen bonds: A:A.79, A:Y.86, A:S.87, A:T.116, A:T.116, A:K.117 Water bridges: A:R.76, A:V.81 Salt bridges: A:R.76, A:K.117 pi-Stacking: A:H.58, A:F.105 Metal complexes: A:H.58

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 1 residues within 4Å: Chain A: H.69 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.69, H2O.3, H2O.8 ZN.3: 1 residues within 4Å: Chain A: D.82 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.82, A:D.82 ZN.4: 1 residues within 4Å: Chain A: D.88 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.88, A:D.88 ZN.5: 1 residues within 4Å: Chain A: H.93 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.93, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rajendran, C. et al., Structure at 1.5 A resolution of cytochrome c(552) with its flexible linker segment, a membrane-anchored protein from Paracoccus denitrificans. Acta Crystallogr.,Sect.D (2010)

Release Date

2010-07-21

Peptides

Cytochrome c-552: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Cytochrome c-552