SMTL ID : 3m9u.3 (3 other biounits)

Crystal structure of geranylgeranyl pyrophosphate synthase from lactobacillus brevis atcc 367

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

homo-dimer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: R.7, F.11, A.58, D.287, A.290, F.291 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.7, A:D.287 GOL.2: 8 residues within 4Å: Chain A: S.43, A.46, L.87, I.88, D.91, R.101, T.106, N.107 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.91, A:N.107 Water bridges: A:Y.42, A:S.43, A:A.46, A:H.108 GOL.3: 5 residues within 4Å: Chain B: P.22, P.69, E.70, W.73, R.74 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:P.69, B:R.74 GOL.4: 5 residues within 4Å: Chain B: N.20, A.21, L.23, K.24, L.45 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.23, B:K.24 Water bridges: B:A.21, B:Q.25 GOL.5: 8 residues within 4Å: Chain B: S.43, A.46, L.87, I.88, D.91, R.101, T.106, N.107 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.43, B:D.91, B:N.107 Water bridges: B:I.88, B:H.108 GOL.6: 7 residues within 4Å: Chain B: H.83, S.86, L.87, D.90, Q.161, K.184, T.185 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.52, B:Q.161 Water bridges: B:H.83, B:S.86 GOL.7: 5 residues within 4Å: Chain B: Q.14, W.15, A.18, F.67, P.69 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.14 GOL.8: 6 residues within 4Å: Chain B: R.7, F.11, A.58, D.286, D.287, A.290 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Crystal Structure of Geranylgeranyl Pyrophosphate Synthase from Lactobacillus Brevis Atcc 367. To be Published

Release Date

2010-04-07

Peptides

Farnesyl-diphosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Farnesyl-diphosphate synthase

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