SMTL ID : 3ma9.1

Crystal structure of gp41 derived protein complexed with fab 8066

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 7 residues within 4Å: Chain A: W.30 Chain B: W.47, S.50, N.59, Y.99 Chain C: W.90, V.95 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.50, B:N.59, B:Y.99 NA.2: 4 residues within 4Å: Chain C: G.24, D.25, N.26, N.68 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:G.24, C:N.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gustchina, E. et al., Structural Basis of HIV-1 Neutralization by Affinity Matured Fabs Directed against the Internal Trimeric Coiled-Coil of gp41. Plos Pathog. (2010)

Release Date

2010-12-01

Peptides

Transmembrane glycoprotein: A
Fab8066 FAB ANTIBODY FRAGMENT, Heavy Chain: B
Fab8066 FAB ANTIBODY FRAGMENT, Light Chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Transmembrane glycoprotein

Fab8066 FAB ANTIBODY FRAGMENT, Heavy Chain

Fab8066 FAB ANTIBODY FRAGMENT, Light Chain

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