SMTL ID : 3mau.2 (1 other biounit)

Crystal structure of StSPL in complex with phosphoethanolamine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

2 x EXT: {5-hydroxy-6-methyl-4-[(E)-{[2-(phosphonooxy)ethyl]imino}methyl]pyridin-3-yl}methyl dihydrogen phosphate(Non-covalent)

EXT.1: 18 residues within 4Å: Chain A: G.103, A.104, Y.106, G.168, G.169, T.170, L.173, H.202, P.248, Y.250, D.275, C.277, L.278, D.309, H.311 Chain B: N.127, H.130, S.354 15 PLIP interactions: 8 interactions with chain A, 7 interactions with chain B Hydrogen bonds: A:A.104, A:A.104, A:Y.106, A:G.169, A:T.170, B:N.127, B:G.353, B:S.354, B:S.354, B:S.354, B:S.354 Salt bridges: A:H.311, A:K.318, B:H.130 pi-Stacking: A:H.202 EXT.2: 20 residues within 4Å: Chain A: N.127, H.130, G.353, S.354 Chain B: G.103, A.104, Y.106, G.168, G.169, T.170, L.173, H.202, P.248, Y.250, D.275, C.277, L.278, D.309, H.311, K.318 16 PLIP interactions: 9 interactions with chain B, 7 interactions with chain A Hydrogen bonds: B:A.104, B:A.104, B:G.169, B:T.170, B:T.170, A:N.127, A:G.353, A:S.354, A:S.354, A:S.354 Water bridges: B:S.167, A:S.354 Salt bridges: B:H.311, B:K.318, A:H.130 pi-Stacking: B:H.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bourquin, F. et al., Structure and Function of Sphingosine-1-Phosphate Lyase, a Key Enzyme of Sphingolipid Metabolism. Structure (2010)

Release Date

2010-08-18

Peptides

sphingosine-1-phosphate lyase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

sphingosine-1-phosphate lyase

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