SMTL ID : 3mcu.1

Crystal structure of the dipicolinate synthase chain B from Bacillus cereus. Northeast Structural Genomics Consortium Target BcR215.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-hexamer

Ligands

7 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: P.81, R.119 Chain F: N.131, K.163 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain F Salt bridges: A:R.119, F:K.163 Hydrogen bonds: F:N.131 PO4.2: 7 residues within 4Å: Chain C: T.13, G.14, S.41, Y.42, T.94, N.96, S.97 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:G.14, C:S.41, C:T.94, C:N.96, C:S.97, C:S.97 Water bridges: C:K.100 Salt bridges: C:K.100 PO4.3: 3 residues within 4Å: Chain A: N.131, K.163 Chain C: R.119 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain A Salt bridges: C:R.119, A:K.163 Hydrogen bonds: A:N.131 PO4.4: 7 residues within 4Å: Chain D: T.13, G.14, S.41, Y.42, T.94, N.96, S.97 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:G.14, D:S.41, D:Y.42, D:Y.42, D:N.96, D:S.97, D:S.97 PO4.5: 8 residues within 4Å: Chain E: T.13, G.14, S.41, Y.42, T.94, N.96, S.97, K.100 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:G.14, E:S.41, E:S.41, E:Y.42, E:N.96, E:S.97 Water bridges: E:K.100 Salt bridges: E:K.100 PO4.6: 3 residues within 4Å: Chain B: N.131, K.163 Chain E: R.119 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain E Hydrogen bonds: B:N.131 Salt bridges: B:K.163, E:R.119 PO4.7: 7 residues within 4Å: Chain F: T.13, G.14, S.41, Y.42, T.94, N.96, S.97 8 PLIP interactions: 8 interactions with chain F Hydrogen bonds: F:G.14, F:S.41, F:T.94, F:T.94, F:N.96, F:S.97, F:S.97 Salt bridges: F:K.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vorobiev, S. et al., Crystal structure of the dipicolinate synthase chain B from Bacillus cereus. To be Published

Release Date

2010-04-14

Peptides

Dipicolinate synthase, B chain: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Dipicolinate synthase, B chain