SMTL ID : 3mcx.1

Crystal structure of SusD superfamily protein (BT_2365) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.49 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: E.177 Ligands: ACT.7 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.177, H2O.29 ZN.2: 1 residues within 4Å: Chain A: E.375 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.375, A:E.375 ZN.3: 3 residues within 4Å: Chain A: E.315, E.319, H.330 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.315, A:E.319, A:E.319, A:H.330 ZN.4: 1 residues within 4Å: Chain A: D.383 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.383 ZN.5: 2 residues within 4Å: Chain A: D.391, S.393 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.391, A:S.393, H2O.9, H2O.22, H2O.28, H2O.29 ZN.6: 1 residues within 4Å: Chain A: H.165 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.165, H2O.29

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.7: 4 residues within 4Å: Chain A: E.177, Q.178, S.181 Ligands: ZN.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:E.177 Hydrogen bonds: A:S.181 Water bridges: A:Q.178, A:Q.178, A:Q.178, A:Q.178, A:S.181 ACT.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ACT.9: 3 residues within 4Å: Chain A: N.196, F.252, Y.261 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.261

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 5 residues within 4Å: Chain A: W.88, Y.92, P.155, E.157, E.465 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.157 Water bridges: A:N.89 GOL.11: 3 residues within 4Å: Chain A: D.64, G.65, K.66 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.64, A:K.66, A:K.66 GOL.12: 3 residues within 4Å: Chain A: R.67, D.287, W.288 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.67, A:R.67, A:D.287, A:D.287 Water bridges: A:K.62 GOL.13: 5 residues within 4Å: Chain A: Y.241, S.386, R.387, T.389, T.390 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.389 Water bridges: A:Y.241, A:Y.241 GOL.14: 1 residues within 4Å: Chain A: E.331 3 PLIP interactions: 3 interactions with chain A Water bridges: A:E.331, A:E.331, A:E.331

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of SusD superfamily protein (BT_2365) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.49 A resolution. To be Published

Release Date

2010-05-19

Peptides

SusD superfamily protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SusD superfamily protein