SMTL ID : 3med.1

HIV-1 K103N Reverse Transcriptase in Complex with TMC125

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 65B: 4-({6-AMINO-5-BROMO-2-[(4-CYANOPHENYL)AMINO]PYRIMIDIN-4-YL}OXY)-3,5-DIMETHYLBENZONITRILE(Non-covalent)

65B.1: 16 residues within 4Å: Chain A: L.100, K.101, N.103, V.106, V.179, Y.181, Y.188, V.189, G.190, F.227, W.229, L.234, H.235, P.236, Y.318 Chain B: E.138 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:N.103, A:V.106, A:Y.181, A:Y.188, A:Y.188, A:W.229, A:L.234, A:L.234, A:Y.318 Hydrogen bonds: A:K.101, A:K.101, A:N.103, B:E.138 pi-Stacking: A:W.229

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: G.436, A.437, N.460, R.461 Chain B: A.288 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.460 Salt bridges: A:R.461 SO4.3: 2 residues within 4Å: Chain A: G.436, R.461 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.461 SO4.4: 4 residues within 4Å: Chain A: K.476, S.515, E.516, L.517 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.515, A:E.516, A:L.517 Water bridges: A:S.515, A:S.515 SO4.5: 4 residues within 4Å: Chain A: N.460 Chain B: T.286, A.288, E.291 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:A.288, B:E.291, B:E.291, A:N.460, A:N.460 SO4.6: 1 residues within 4Å: Chain B: R.199 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.199 SO4.7: 4 residues within 4Å: Chain B: E.233, L.234, H.235, W.239 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.235

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 1 residues within 4Å: Chain B: Y.319 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lansdon, E.B. et al., Crystal Structures of HIV-1 Reverse Transcriptase with Etravirine (TMC125) and Rilpivirine (TMC278): Implications for Drug Design. J.Med.Chem. (2010)

Release Date

2010-05-12

Peptides

p66 Reverse transcriptase: A
p51 Reverse transcriptase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

p66 Reverse transcriptase

p51 Reverse transcriptase

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