SMTL ID : 3meg.1

HIV-1 K103N Reverse Transcriptase in Complex with TMC278

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x T27: 4-{[4-({4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}amino)pyrimidin-2-yl]amino}benzonitrile(Non-covalent)

T27.1: 16 residues within 4Å: Chain A: P.95, L.100, K.101, N.103, V.106, V.179, Y.181, Y.188, F.227, L.228, W.229, L.234, H.235, P.236, Y.318 Chain B: E.138 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:P.95, A:L.100, A:L.100, A:V.106, A:Y.181, A:Y.181, A:Y.188, A:Y.188, A:Y.318 Hydrogen bonds: A:K.101, A:K.101, A:K.101, A:N.103

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: G.436, A.437, E.438, N.460, R.461 Chain B: A.288 Ligands: SO4.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.436, A:G.436, A:N.460 Salt bridges: A:R.461 SO4.3: 2 residues within 4Å: Chain A: G.436, R.461 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.461 SO4.4: 4 residues within 4Å: Chain A: N.460 Chain B: A.288, E.291 Ligands: SO4.2 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:A.288, A:N.460, A:N.460 SO4.5: 3 residues within 4Å: Chain A: S.515, E.516, L.517 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.516, A:L.517 Salt bridges: A:K.476 SO4.6: 2 residues within 4Å: Chain B: H.235, W.239 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.235, B:H.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lansdon, E.B. et al., Crystal Structures of HIV-1 Reverse Transcriptase with Etravirine (TMC125) and Rilpivirine (TMC278): Implications for Drug Design. J.Med.Chem. (2010)

Release Date

2010-05-12

Peptides

p66 Reverse transcriptase: A
p51 Reverse transcriptase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

p66 Reverse transcriptase

p51 Reverse transcriptase

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