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SMTL ID : 3mf1.1
Crystal structure of class II aaRS homologue (Bll0957) complexed with an analogue of glycyl adenylate
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.20 Å
Oligo State
homo-dimer
Ligands
2 x
ZN
:
ZINC ION
(Non-covalent)
ZN.1:
4 residues within 4Å:
Chain A:
C.151
,
E.196
,
C.299
Ligands:
G5A.2
3
PLIP interactions
:
3 interactions with chain A
Metal complexes:
A:C.151
,
A:E.196
,
A:C.299
ZN.3:
4 residues within 4Å:
Chain B:
C.151
,
E.196
,
C.299
Ligands:
G5A.4
3
PLIP interactions
:
3 interactions with chain B
Metal complexes:
B:C.151
,
B:E.196
,
B:C.299
2 x
G5A
:
5'-O-(glycylsulfamoyl)adenosine
(Non-covalent)
G5A.2:
21 residues within 4Å:
Chain A:
A.149
,
C.151
,
R.179
,
E.181
,
D.187
,
R.188
,
L.189
,
F.192
,
M.194
,
E.196
,
K.255
,
A.270
,
C.271
,
M.272
,
S.273
,
N.275
,
C.299
,
A.301
,
G.303
,
R.306
Ligands:
ZN.1
21
PLIP interactions
:
21 interactions with chain A
Hydrogen bonds:
A:R.179
,
A:R.179
,
A:E.181
,
A:E.181
,
A:L.189
,
A:E.196
,
A:K.255
,
A:A.270
,
A:S.273
,
A:S.273
,
A:N.275
Water bridges:
A:E.257
,
A:R.306
,
A:R.306
,
A:R.306
Salt bridges:
A:R.179
,
A:K.255
pi-Stacking:
A:F.192
,
A:F.192
pi-Cation interactions:
A:R.306
,
A:R.306
G5A.4:
21 residues within 4Å:
Chain B:
A.149
,
C.151
,
R.179
,
E.181
,
D.187
,
R.188
,
L.189
,
F.192
,
M.194
,
E.196
,
K.255
,
A.270
,
C.271
,
M.272
,
S.273
,
N.275
,
C.299
,
A.301
,
G.303
,
R.306
Ligands:
ZN.3
19
PLIP interactions
:
19 interactions with chain B
Hydrogen bonds:
B:R.179
,
B:R.179
,
B:E.181
,
B:L.189
,
B:E.196
,
B:A.270
,
B:S.273
,
B:S.273
,
B:N.275
,
B:G.303
Water bridges:
B:K.255
,
B:E.257
,
B:R.306
Salt bridges:
B:R.179
,
B:K.255
pi-Stacking:
B:F.192
,
B:F.192
pi-Cation interactions:
B:R.306
,
B:R.306
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Mocibob, M. et al., Homologs of aminoacyl-tRNA synthetases acylate carrier proteins and provide a link between ribosomal and nonribosomal peptide synthesis. Proc.Natl.Acad.Sci.USA (2010)
Release Date
2010-07-28
Peptides
Bll0957 protein:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Bll0957 protein
Related Entries With Identical Sequence
3mey.1
|
3mf2.1
|
3pzc.1
|
4h2s.1
|
4h2t.1
|
4h2u.1
|
4h2v.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme