SMTL ID : 3mi5.1

Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

hetero-12-12-mer

Ligands

24 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: N.37, R.38, T.105, H.107 Ligands: GOL.4 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain C: N.37, T.105, H.107 Ligand excluded by PLIP SO4.28: 3 residues within 4Å: Chain D: R.109, L.119, P.121 Ligand excluded by PLIP SO4.35: 5 residues within 4Å: Chain E: N.37, R.38, T.105, H.107 Ligands: GOL.37 Ligand excluded by PLIP SO4.43: 3 residues within 4Å: Chain F: N.112, R.150 Ligands: CL.51 Ligand excluded by PLIP SO4.53: 4 residues within 4Å: Chain G: N.37, T.105, H.107 Ligands: BME.59 Ligand excluded by PLIP SO4.68: 3 residues within 4Å: Chain H: N.112, R.150 Ligands: BME.65 Ligand excluded by PLIP SO4.71: 4 residues within 4Å: Chain I: N.37, T.105, H.107 Ligands: BME.78 Ligand excluded by PLIP SO4.80: 4 residues within 4Å: Chain J: R.109, L.119, D.120, P.121 Ligand excluded by PLIP SO4.83: 1 residues within 4Å: Chain J: R.83 Ligand excluded by PLIP SO4.87: 5 residues within 4Å: Chain K: N.37, R.38, T.105, H.107 Ligands: GOL.89 Ligand excluded by PLIP SO4.99: 4 residues within 4Å: Chain L: R.109, L.119, D.120, P.121 Ligand excluded by PLIP SO4.103: 5 residues within 4Å: Chain M: N.37, R.38, T.105, H.107 Ligands: GOL.106 Ligand excluded by PLIP SO4.122: 3 residues within 4Å: Chain O: N.37, T.105, H.107 Ligand excluded by PLIP SO4.130: 3 residues within 4Å: Chain P: R.109, L.119, P.121 Ligand excluded by PLIP SO4.137: 5 residues within 4Å: Chain Q: N.37, R.38, T.105, H.107 Ligands: GOL.139 Ligand excluded by PLIP SO4.145: 3 residues within 4Å: Chain R: N.112, R.150 Ligands: CL.153 Ligand excluded by PLIP SO4.155: 4 residues within 4Å: Chain S: N.37, T.105, H.107 Ligands: BME.161 Ligand excluded by PLIP SO4.170: 3 residues within 4Å: Chain T: N.112, R.150 Ligands: BME.167 Ligand excluded by PLIP SO4.173: 4 residues within 4Å: Chain U: N.37, T.105, H.107 Ligands: BME.180 Ligand excluded by PLIP SO4.182: 4 residues within 4Å: Chain V: R.109, L.119, D.120, P.121 Ligand excluded by PLIP SO4.185: 1 residues within 4Å: Chain V: R.83 Ligand excluded by PLIP SO4.189: 5 residues within 4Å: Chain W: N.37, R.38, T.105, H.107 Ligands: GOL.191 Ligand excluded by PLIP SO4.201: 4 residues within 4Å: Chain X: R.109, L.119, D.120, P.121 Ligand excluded by PLIP

50 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 3 residues within 4Å: Chain A: T.98, F.99, D.100 Ligand excluded by PLIP BME.12: 2 residues within 4Å: Chain B: R.109, P.121 Ligand excluded by PLIP BME.13: 4 residues within 4Å: Chain B: P.215 Chain R: R.7, P.40, Q.41 Ligand excluded by PLIP BME.16: 7 residues within 4Å: Chain A: Y.16 Chain B: D.113, H.147, P.148, W.149, R.150 Ligands: CAQ.18 Ligand excluded by PLIP BME.19: 3 residues within 4Å: Chain B: F.56, C.129, L.130 Ligand excluded by PLIP BME.21: 3 residues within 4Å: Chain C: T.98, F.99, D.100 Ligand excluded by PLIP BME.23: 3 residues within 4Å: Chain C: Y.56, G.60, R.188 Ligand excluded by PLIP BME.29: 4 residues within 4Å: Chain D: R.7, Q.41, R.231 Chain L: P.215 Ligand excluded by PLIP BME.31: 6 residues within 4Å: Chain B: S.38, I.39, P.40 Chain D: R.150, P.153 Chain V: M.216 Ligand excluded by PLIP BME.39: 3 residues within 4Å: Chain E: T.98, F.99, D.100 Ligand excluded by PLIP BME.46: 5 residues within 4Å: Chain D: S.38, I.39, P.40 Chain F: R.150 Chain L: M.216 Ligand excluded by PLIP BME.50: 4 residues within 4Å: Chain F: T.21, P.22, D.23, K.193 Ligand excluded by PLIP BME.52: 2 residues within 4Å: Chain F: R.83, P.91 Ligand excluded by PLIP BME.54: 4 residues within 4Å: Chain G: T.97, T.98, F.99, D.100 Ligand excluded by PLIP BME.59: 7 residues within 4Å: Chain G: W.36, N.37, T.95, A.96, W.104, T.105 Ligands: SO4.53 Ligand excluded by PLIP BME.62: 3 residues within 4Å: Chain H: G.57, A.58, H.59 Ligand excluded by PLIP BME.65: 10 residues within 4Å: Chain G: Y.16 Chain H: D.113, R.114, H.147, P.148, W.149, R.150 Chain T: M.216 Ligands: SO4.68, CAQ.69 Ligand excluded by PLIP BME.67: 3 residues within 4Å: Chain H: H.234, F.235, E.236 Ligand excluded by PLIP BME.70: 4 residues within 4Å: Chain H: P.32, R.33 Chain J: P.22, I.28 Ligand excluded by PLIP BME.74: 5 residues within 4Å: Chain I: A.25, T.98, F.99, D.100 Chain J: K.111 Ligand excluded by PLIP BME.78: 8 residues within 4Å: Chain I: W.36, N.37, T.95, A.96, E.103, W.104, T.105 Ligands: SO4.71 Ligand excluded by PLIP BME.91: 5 residues within 4Å: Chain K: L.23, N.28, P.29 Chain L: N.66, F.67 Ligand excluded by PLIP BME.93: 5 residues within 4Å: Chain K: A.25, T.98, F.99, D.100 Ligands: GOL.89 Ligand excluded by PLIP BME.96: 5 residues within 4Å: Chain L: N.5, S.6, Q.230, R.231, K.232 Ligand excluded by PLIP BME.102: 1 residues within 4Å: Chain L: R.83 Ligand excluded by PLIP BME.104: 3 residues within 4Å: Chain M: T.98, F.99, D.100 Ligand excluded by PLIP BME.114: 2 residues within 4Å: Chain N: R.109, P.121 Ligand excluded by PLIP BME.115: 4 residues within 4Å: Chain F: R.7, P.40, Q.41 Chain N: P.215 Ligand excluded by PLIP BME.118: 7 residues within 4Å: Chain M: Y.16 Chain N: D.113, H.147, P.148, W.149, R.150 Ligands: CAQ.120 Ligand excluded by PLIP BME.121: 3 residues within 4Å: Chain N: F.56, C.129, L.130 Ligand excluded by PLIP BME.123: 3 residues within 4Å: Chain O: T.98, F.99, D.100 Ligand excluded by PLIP BME.125: 3 residues within 4Å: Chain O: Y.56, G.60, R.188 Ligand excluded by PLIP BME.131: 4 residues within 4Å: Chain P: R.7, Q.41, R.231 Chain X: P.215 Ligand excluded by PLIP BME.133: 6 residues within 4Å: Chain J: M.216 Chain N: S.38, I.39, P.40 Chain P: R.150, P.153 Ligand excluded by PLIP BME.141: 3 residues within 4Å: Chain Q: T.98, F.99, D.100 Ligand excluded by PLIP BME.148: 5 residues within 4Å: Chain P: S.38, I.39, P.40 Chain R: R.150 Chain X: M.216 Ligand excluded by PLIP BME.152: 4 residues within 4Å: Chain R: T.21, P.22, D.23, K.193 Ligand excluded by PLIP BME.154: 2 residues within 4Å: Chain R: R.83, P.91 Ligand excluded by PLIP BME.156: 4 residues within 4Å: Chain S: T.97, T.98, F.99, D.100 Ligand excluded by PLIP BME.161: 7 residues within 4Å: Chain S: W.36, N.37, T.95, A.96, W.104, T.105 Ligands: SO4.155 Ligand excluded by PLIP BME.164: 3 residues within 4Å: Chain T: G.57, A.58, H.59 Ligand excluded by PLIP BME.167: 10 residues within 4Å: Chain H: M.216 Chain S: Y.16 Chain T: D.113, R.114, H.147, P.148, W.149, R.150 Ligands: SO4.170, CAQ.171 Ligand excluded by PLIP BME.169: 3 residues within 4Å: Chain T: H.234, F.235, E.236 Ligand excluded by PLIP BME.172: 4 residues within 4Å: Chain T: P.32, R.33 Chain V: P.22, I.28 Ligand excluded by PLIP BME.176: 5 residues within 4Å: Chain U: A.25, T.98, F.99, D.100 Chain V: K.111 Ligand excluded by PLIP BME.180: 8 residues within 4Å: Chain U: W.36, N.37, T.95, A.96, E.103, W.104, T.105 Ligands: SO4.173 Ligand excluded by PLIP BME.193: 5 residues within 4Å: Chain W: L.23, N.28, P.29 Chain X: N.66, F.67 Ligand excluded by PLIP BME.195: 5 residues within 4Å: Chain W: A.25, T.98, F.99, D.100 Ligands: GOL.191 Ligand excluded by PLIP BME.198: 5 residues within 4Å: Chain X: N.5, S.6, Q.230, R.231, K.232 Ligand excluded by PLIP BME.204: 1 residues within 4Å: Chain X: R.83 Ligand excluded by PLIP

84 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: T.169, I.171, R.184, F.185, D.186, R.188 Ligand excluded by PLIP GOL.4: 8 residues within 4Å: Chain A: W.36, N.37, T.95, A.96, E.103, W.104, T.105 Ligands: SO4.1 Ligand excluded by PLIP GOL.5: 8 residues within 4Å: Chain A: R.38, L.39, A.40, K.41, N.84, L.85, N.87, N.90 Ligand excluded by PLIP GOL.6: 7 residues within 4Å: Chain A: L.23, N.28, P.29 Chain B: N.66, F.67, G.124, V.126 Ligand excluded by PLIP GOL.8: 7 residues within 4Å: Chain A: L.21, A.22, L.23, E.24, T.30, E.34, W.36 Ligand excluded by PLIP GOL.10: 8 residues within 4Å: Chain B: Q.202, Q.203, I.205, K.207, R.222, F.223, D.224 Chain Q: I.2 Ligand excluded by PLIP GOL.11: 3 residues within 4Å: Chain B: R.107, P.118, L.119 Ligand excluded by PLIP GOL.14: 5 residues within 4Å: Chain B: R.33 Chain D: L.20, P.22, I.28, R.33 Ligand excluded by PLIP GOL.15: 6 residues within 4Å: Chain B: R.150 Chain E: L.160 Chain F: S.38, I.39, P.40 Chain N: M.216 Ligand excluded by PLIP GOL.22: 7 residues within 4Å: Chain C: L.23, N.28, P.29 Chain D: N.66, F.67, G.124, V.126 Ligand excluded by PLIP GOL.24: 6 residues within 4Å: Chain C: T.169, I.171, R.184, F.185, D.186, R.188 Ligand excluded by PLIP GOL.26: 8 residues within 4Å: Chain C: R.38, L.39, A.40, K.41, N.84, L.85, N.87, N.90 Ligand excluded by PLIP GOL.30: 3 residues within 4Å: Chain D: R.33 Chain F: P.22, I.28 Ligand excluded by PLIP GOL.32: 8 residues within 4Å: Chain D: Q.202, Q.203, I.205, K.207, R.222, F.223, D.224 Chain S: I.2 Ligand excluded by PLIP GOL.36: 9 residues within 4Å: Chain E: R.38, L.39, A.40, K.41, N.84, L.85, N.87, A.88, N.90 Ligand excluded by PLIP GOL.37: 9 residues within 4Å: Chain E: W.36, N.37, T.95, A.96, T.98, E.103, W.104, T.105 Ligands: SO4.35 Ligand excluded by PLIP GOL.38: 7 residues within 4Å: Chain E: E.168, T.169, I.171, R.184, F.185, D.186, R.188 Ligand excluded by PLIP GOL.41: 7 residues within 4Å: Chain E: L.21, A.22, L.23, E.24, T.30, E.34, W.36 Ligand excluded by PLIP GOL.44: 3 residues within 4Å: Chain F: F.56, C.129, L.130 Ligand excluded by PLIP GOL.45: 7 residues within 4Å: Chain E: L.23, N.28, P.29 Chain F: F.67, G.124, G.125, V.126 Ligand excluded by PLIP GOL.47: 7 residues within 4Å: Chain F: Q.203, I.205, K.207, R.222, F.223, D.224 Chain I: I.2 Ligand excluded by PLIP GOL.48: 4 residues within 4Å: Chain B: P.22, I.28 Chain F: L.20, R.33 Ligand excluded by PLIP GOL.55: 8 residues within 4Å: Chain G: R.38, L.39, A.40, K.41, N.84, L.85, N.87, N.90 Ligand excluded by PLIP GOL.56: 5 residues within 4Å: Chain G: I.171, R.184, F.185, D.186, R.188 Ligand excluded by PLIP GOL.57: 1 residues within 4Å: Chain G: R.174 Ligand excluded by PLIP GOL.58: 8 residues within 4Å: Chain G: L.23, N.28, P.29, R.31 Chain H: N.66, F.67, G.124, V.126 Ligand excluded by PLIP GOL.63: 7 residues within 4Å: Chain H: R.150, P.153 Chain L: S.38, I.39, P.40 Chain T: P.215, M.216 Ligand excluded by PLIP GOL.64: 8 residues within 4Å: Chain H: Q.202, Q.203, I.205, K.207, R.222, F.223, D.224 Chain W: I.2 Ligand excluded by PLIP GOL.66: 3 residues within 4Å: Chain H: F.56, C.129, L.130 Ligand excluded by PLIP GOL.72: 7 residues within 4Å: Chain I: E.168, T.169, I.171, R.184, F.185, D.186, R.188 Ligand excluded by PLIP GOL.73: 3 residues within 4Å: Chain I: Y.56, G.60, R.188 Ligand excluded by PLIP GOL.75: 9 residues within 4Å: Chain I: R.38, L.39, A.40, K.41, N.84, L.85, N.87, A.88, N.90 Ligand excluded by PLIP GOL.76: 7 residues within 4Å: Chain I: L.23, N.28, P.29 Chain J: N.66, F.67, G.124, V.126 Ligand excluded by PLIP GOL.81: 6 residues within 4Å: Chain F: P.215 Chain J: R.7, I.10, P.40, Q.41, E.236 Ligand excluded by PLIP GOL.82: 8 residues within 4Å: Chain J: Q.202, Q.203, I.205, K.207, R.222, F.223, D.224 Chain M: I.2 Ligand excluded by PLIP GOL.85: 5 residues within 4Å: Chain G: L.160 Chain H: S.38, P.40 Chain J: R.150 Chain P: M.216 Ligand excluded by PLIP GOL.88: 7 residues within 4Å: Chain K: E.168, T.169, I.171, R.184, F.185, D.186, R.188 Ligand excluded by PLIP GOL.89: 10 residues within 4Å: Chain K: W.36, N.37, T.95, A.96, T.98, E.103, W.104, T.105 Ligands: SO4.87, BME.93 Ligand excluded by PLIP GOL.90: 8 residues within 4Å: Chain K: R.38, L.39, A.40, K.41, L.85, N.87, A.88, N.90 Ligand excluded by PLIP GOL.95: 7 residues within 4Å: Chain C: I.2 Chain L: Q.203, I.205, K.207, R.222, F.223, D.224 Ligand excluded by PLIP GOL.97: 4 residues within 4Å: Chain H: P.22, I.28, R.33 Chain L: R.33 Ligand excluded by PLIP GOL.98: 7 residues within 4Å: Chain L: R.7, F.8, I.10, P.40, Q.41, R.231 Chain T: P.215 Ligand excluded by PLIP GOL.105: 6 residues within 4Å: Chain M: T.169, I.171, R.184, F.185, D.186, R.188 Ligand excluded by PLIP GOL.106: 8 residues within 4Å: Chain M: W.36, N.37, T.95, A.96, E.103, W.104, T.105 Ligands: SO4.103 Ligand excluded by PLIP GOL.107: 8 residues within 4Å: Chain M: R.38, L.39, A.40, K.41, N.84, L.85, N.87, N.90 Ligand excluded by PLIP GOL.108: 7 residues within 4Å: Chain M: L.23, N.28, P.29 Chain N: N.66, F.67, G.124, V.126 Ligand excluded by PLIP GOL.110: 7 residues within 4Å: Chain M: L.21, A.22, L.23, E.24, T.30, E.34, W.36 Ligand excluded by PLIP GOL.112: 8 residues within 4Å: Chain E: I.2 Chain N: Q.202, Q.203, I.205, K.207, R.222, F.223, D.224 Ligand excluded by PLIP GOL.113: 3 residues within 4Å: Chain N: R.107, P.118, L.119 Ligand excluded by PLIP GOL.116: 5 residues within 4Å: Chain N: R.33 Chain P: L.20, P.22, I.28, R.33 Ligand excluded by PLIP GOL.117: 6 residues within 4Å: Chain B: M.216 Chain N: R.150 Chain Q: L.160 Chain R: S.38, I.39, P.40 Ligand excluded by PLIP GOL.124: 7 residues within 4Å: Chain O: L.23, N.28, P.29 Chain P: N.66, F.67, G.124, V.126 Ligand excluded by PLIP GOL.126: 6 residues within 4Å: Chain O: T.169, I.171, R.184, F.185, D.186, R.188 Ligand excluded by PLIP GOL.128: 8 residues within 4Å: Chain O: R.38, L.39, A.40, K.41, N.84, L.85, N.87, N.90 Ligand excluded by PLIP GOL.132: 3 residues within 4Å: Chain P: R.33 Chain R: P.22, I.28 Ligand excluded by PLIP GOL.134: 8 residues within 4Å: Chain G: I.2 Chain P: Q.202, Q.203, I.205, K.207, R.222, F.223, D.224 Ligand excluded by PLIP GOL.138: 9 residues within 4Å: Chain Q: R.38, L.39, A.40, K.41, N.84, L.85, N.87, A.88, N.90 Ligand excluded by PLIP GOL.139: 9 residues within 4Å: Chain Q: W.36, N.37, T.95, A.96, T.98, E.103, W.104, T.105 Ligands: SO4.137 Ligand excluded by PLIP GOL.140: 7 residues within 4Å: Chain Q: E.168, T.169, I.171, R.184, F.185, D.186, R.188 Ligand excluded by PLIP GOL.143: 7 residues within 4Å: Chain Q: L.21, A.22, L.23, E.24, T.30, E.34, W.36 Ligand excluded by PLIP GOL.146: 3 residues within 4Å: Chain R: F.56, C.129, L.130 Ligand excluded by PLIP GOL.147: 7 residues within 4Å: Chain Q: L.23, N.28, P.29 Chain R: F.67, G.124, G.125, V.126 Ligand excluded by PLIP GOL.149: 7 residues within 4Å: Chain R: Q.203, I.205, K.207, R.222, F.223, D.224 Chain U: I.2 Ligand excluded by PLIP GOL.150: 4 residues within 4Å: Chain N: P.22, I.28 Chain R: L.20, R.33 Ligand excluded by PLIP GOL.157: 8 residues within 4Å: Chain S: R.38, L.39, A.40, K.41, N.84, L.85, N.87, N.90 Ligand excluded by PLIP GOL.158: 5 residues within 4Å: Chain S: I.171, R.184, F.185, D.186, R.188 Ligand excluded by PLIP GOL.159: 1 residues within 4Å: Chain S: R.174 Ligand excluded by PLIP GOL.160: 8 residues within 4Å: Chain S: L.23, N.28, P.29, R.31 Chain T: N.66, F.67, G.124, V.126 Ligand excluded by PLIP GOL.165: 7 residues within 4Å: Chain H: P.215, M.216 Chain T: R.150, P.153 Chain X: S.38, I.39, P.40 Ligand excluded by PLIP GOL.166: 8 residues within 4Å: Chain K: I.2 Chain T: Q.202, Q.203, I.205, K.207, R.222, F.223, D.224 Ligand excluded by PLIP GOL.168: 3 residues within 4Å: Chain T: F.56, C.129, L.130 Ligand excluded by PLIP GOL.174: 7 residues within 4Å: Chain U: E.168, T.169, I.171, R.184, F.185, D.186, R.188 Ligand excluded by PLIP GOL.175: 3 residues within 4Å: Chain U: Y.56, G.60, R.188 Ligand excluded by PLIP GOL.177: 9 residues within 4Å: Chain U: R.38, L.39, A.40, K.41, N.84, L.85, N.87, A.88, N.90 Ligand excluded by PLIP GOL.178: 7 residues within 4Å: Chain U: L.23, N.28, P.29 Chain V: N.66, F.67, G.124, V.126 Ligand excluded by PLIP GOL.183: 6 residues within 4Å: Chain R: P.215 Chain V: R.7, I.10, P.40, Q.41, E.236 Ligand excluded by PLIP GOL.184: 8 residues within 4Å: Chain A: I.2 Chain V: Q.202, Q.203, I.205, K.207, R.222, F.223, D.224 Ligand excluded by PLIP GOL.187: 5 residues within 4Å: Chain D: M.216 Chain S: L.160 Chain T: S.38, P.40 Chain V: R.150 Ligand excluded by PLIP GOL.190: 7 residues within 4Å: Chain W: E.168, T.169, I.171, R.184, F.185, D.186, R.188 Ligand excluded by PLIP GOL.191: 10 residues within 4Å: Chain W: W.36, N.37, T.95, A.96, T.98, E.103, W.104, T.105 Ligands: SO4.189, BME.195 Ligand excluded by PLIP GOL.192: 8 residues within 4Å: Chain W: R.38, L.39, A.40, K.41, L.85, N.87, A.88, N.90 Ligand excluded by PLIP GOL.197: 7 residues within 4Å: Chain O: I.2 Chain X: Q.203, I.205, K.207, R.222, F.223, D.224 Ligand excluded by PLIP GOL.199: 4 residues within 4Å: Chain T: P.22, I.28, R.33 Chain X: R.33 Ligand excluded by PLIP GOL.200: 7 residues within 4Å: Chain H: P.215 Chain X: R.7, F.8, I.10, P.40, Q.41, R.231 Ligand excluded by PLIP

24 x CAQ: CATECHOL(Non-covalent)

CAQ.7: 5 residues within 4Å: Chain A: N.152, P.164, R.167, E.168, I.171 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.167, A:E.168, A:I.171 Hydrogen bonds: A:P.164, A:R.167 CAQ.18: 10 residues within 4Å: Chain A: P.15, Y.16 Chain B: Y.108, H.147, W.149, R.157, H.160, Y.162 Ligands: FE.9, BME.16 7 PLIP interactions: 2 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:P.15, A:Y.16, B:W.149, B:W.149, B:R.157 Hydrogen bonds: B:R.157 pi-Cation interactions: B:H.147 CAQ.25: 5 residues within 4Å: Chain C: N.152, P.164, R.167, E.168, I.171 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:R.167, C:E.168, C:I.171 Hydrogen bonds: C:R.167 Water bridges: C:A.153, C:N.159 CAQ.33: 9 residues within 4Å: Chain C: P.15, Y.16 Chain D: Y.108, H.147, W.149, R.157, H.160, Y.162 Ligands: FE.27 6 PLIP interactions: 2 interactions with chain C, 4 interactions with chain D Hydrophobic interactions: C:P.15, C:Y.16, D:W.149, D:W.149, D:R.157 Hydrogen bonds: D:R.157 CAQ.40: 5 residues within 4Å: Chain E: N.152, L.158, P.164, R.167, I.171 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:L.158, E:R.167, E:I.171 Hydrogen bonds: E:R.167 CAQ.49: 9 residues within 4Å: Chain E: P.15, Y.16 Chain F: Y.108, H.147, W.149, R.157, H.160, Y.162 Ligands: FE.42 7 PLIP interactions: 5 interactions with chain F, 2 interactions with chain E Hydrophobic interactions: F:W.149, F:W.149, F:R.157, E:P.15, E:Y.16 Hydrogen bonds: F:R.157 pi-Cation interactions: F:H.147 CAQ.60: 6 residues within 4Å: Chain G: N.152, L.158, P.164, R.167, E.168, I.171 5 PLIP interactions: 5 interactions with chain G Hydrophobic interactions: G:L.158, G:R.167, G:E.168, G:I.171 Hydrogen bonds: G:R.167 CAQ.69: 10 residues within 4Å: Chain G: P.15, Y.16 Chain H: Y.108, H.147, W.149, R.157, H.160, Y.162 Ligands: FE.61, BME.65 7 PLIP interactions: 5 interactions with chain H, 2 interactions with chain G Hydrophobic interactions: H:W.149, H:W.149, H:R.157, G:P.15, G:Y.16 Hydrogen bonds: H:R.157 pi-Cation interactions: H:H.147 CAQ.77: 4 residues within 4Å: Chain I: N.152, P.164, R.167, I.171 3 PLIP interactions: 3 interactions with chain I Hydrophobic interactions: I:R.167, I:I.171 Hydrogen bonds: I:R.167 CAQ.84: 9 residues within 4Å: Chain I: P.15, Y.16 Chain J: Y.108, H.147, W.149, R.157, H.160, Y.162 Ligands: FE.79 7 PLIP interactions: 5 interactions with chain J, 2 interactions with chain I Hydrophobic interactions: J:W.149, J:W.149, J:R.157, I:P.15, I:Y.16 Hydrogen bonds: J:R.157 pi-Cation interactions: J:H.147 CAQ.92: 5 residues within 4Å: Chain K: N.152, P.164, R.167, E.168, I.171 4 PLIP interactions: 4 interactions with chain K Hydrophobic interactions: K:R.167, K:E.168, K:I.171 Hydrogen bonds: K:R.167 CAQ.100: 9 residues within 4Å: Chain K: P.15, Y.16 Chain L: Y.108, H.147, W.149, R.157, H.160, Y.162 Ligands: FE.94 7 PLIP interactions: 2 interactions with chain K, 5 interactions with chain L Hydrophobic interactions: K:P.15, K:Y.16, L:W.149, L:W.149, L:R.157 Hydrogen bonds: L:R.157 pi-Cation interactions: L:H.147 CAQ.109: 5 residues within 4Å: Chain M: N.152, P.164, R.167, E.168, I.171 5 PLIP interactions: 5 interactions with chain M Hydrophobic interactions: M:R.167, M:E.168, M:I.171 Hydrogen bonds: M:P.164, M:R.167 CAQ.120: 10 residues within 4Å: Chain M: P.15, Y.16 Chain N: Y.108, H.147, W.149, R.157, H.160, Y.162 Ligands: FE.111, BME.118 7 PLIP interactions: 2 interactions with chain M, 5 interactions with chain N Hydrophobic interactions: M:P.15, M:Y.16, N:W.149, N:W.149, N:R.157 Hydrogen bonds: N:R.157 pi-Cation interactions: N:H.147 CAQ.127: 5 residues within 4Å: Chain O: N.152, P.164, R.167, E.168, I.171 6 PLIP interactions: 6 interactions with chain O Hydrophobic interactions: O:R.167, O:E.168, O:I.171 Hydrogen bonds: O:R.167 Water bridges: O:A.153, O:N.159 CAQ.135: 9 residues within 4Å: Chain O: P.15, Y.16 Chain P: Y.108, H.147, W.149, R.157, H.160, Y.162 Ligands: FE.129 6 PLIP interactions: 4 interactions with chain P, 2 interactions with chain O Hydrophobic interactions: P:W.149, P:W.149, P:R.157, O:P.15, O:Y.16 Hydrogen bonds: P:R.157 CAQ.142: 5 residues within 4Å: Chain Q: N.152, L.158, P.164, R.167, I.171 4 PLIP interactions: 4 interactions with chain Q Hydrophobic interactions: Q:L.158, Q:R.167, Q:I.171 Hydrogen bonds: Q:R.167 CAQ.151: 9 residues within 4Å: Chain Q: P.15, Y.16 Chain R: Y.108, H.147, W.149, R.157, H.160, Y.162 Ligands: FE.144 7 PLIP interactions: 2 interactions with chain Q, 5 interactions with chain R Hydrophobic interactions: Q:P.15, Q:Y.16, R:W.149, R:W.149, R:R.157 Hydrogen bonds: R:R.157 pi-Cation interactions: R:H.147 CAQ.162: 6 residues within 4Å: Chain S: N.152, L.158, P.164, R.167, E.168, I.171 5 PLIP interactions: 5 interactions with chain S Hydrophobic interactions: S:L.158, S:R.167, S:E.168, S:I.171 Hydrogen bonds: S:R.167 CAQ.171: 10 residues within 4Å: Chain S: P.15, Y.16 Chain T: Y.108, H.147, W.149, R.157, H.160, Y.162 Ligands: FE.163, BME.167 7 PLIP interactions: 5 interactions with chain T, 2 interactions with chain S Hydrophobic interactions: T:W.149, T:W.149, T:R.157, S:P.15, S:Y.16 Hydrogen bonds: T:R.157 pi-Cation interactions: T:H.147 CAQ.179: 4 residues within 4Å: Chain U: N.152, P.164, R.167, I.171 3 PLIP interactions: 3 interactions with chain U Hydrophobic interactions: U:R.167, U:I.171 Hydrogen bonds: U:R.167 CAQ.186: 9 residues within 4Å: Chain U: P.15, Y.16 Chain V: Y.108, H.147, W.149, R.157, H.160, Y.162 Ligands: FE.181 7 PLIP interactions: 5 interactions with chain V, 2 interactions with chain U Hydrophobic interactions: V:W.149, V:W.149, V:R.157, U:P.15, U:Y.16 Hydrogen bonds: V:R.157 pi-Cation interactions: V:H.147 CAQ.194: 5 residues within 4Å: Chain W: N.152, P.164, R.167, E.168, I.171 4 PLIP interactions: 4 interactions with chain W Hydrophobic interactions: W:R.167, W:E.168, W:I.171 Hydrogen bonds: W:R.167 CAQ.202: 9 residues within 4Å: Chain W: P.15, Y.16 Chain X: Y.108, H.147, W.149, R.157, H.160, Y.162 Ligands: FE.196 7 PLIP interactions: 5 interactions with chain X, 2 interactions with chain W Hydrophobic interactions: X:W.149, X:W.149, X:R.157, W:P.15, W:Y.16 Hydrogen bonds: X:R.157 pi-Cation interactions: X:H.147

12 x FE: FE (III) ION(Non-covalent)

FE.9: 5 residues within 4Å: Chain B: Y.108, R.157, H.160, Y.162 Ligands: CAQ.18 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:Y.108, B:H.160, B:Y.162 FE.27: 5 residues within 4Å: Chain D: Y.108, R.157, H.160, Y.162 Ligands: CAQ.33 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:Y.108, D:H.160, D:Y.162 FE.42: 5 residues within 4Å: Chain F: Y.108, R.157, H.160, Y.162 Ligands: CAQ.49 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:Y.108, F:H.160, F:Y.162 FE.61: 5 residues within 4Å: Chain H: Y.108, R.157, H.160, Y.162 Ligands: CAQ.69 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:Y.108, H:H.160, H:Y.162 FE.79: 5 residues within 4Å: Chain J: Y.108, R.157, H.160, Y.162 Ligands: CAQ.84 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:Y.108, J:H.160, J:Y.162 FE.94: 5 residues within 4Å: Chain L: Y.108, R.157, H.160, Y.162 Ligands: CAQ.100 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:Y.108, L:H.160, L:Y.162 FE.111: 5 residues within 4Å: Chain N: Y.108, R.157, H.160, Y.162 Ligands: CAQ.120 3 PLIP interactions: 3 interactions with chain N Metal complexes: N:Y.108, N:H.160, N:Y.162 FE.129: 5 residues within 4Å: Chain P: Y.108, R.157, H.160, Y.162 Ligands: CAQ.135 3 PLIP interactions: 3 interactions with chain P Metal complexes: P:Y.108, P:H.160, P:Y.162 FE.144: 5 residues within 4Å: Chain R: Y.108, R.157, H.160, Y.162 Ligands: CAQ.151 3 PLIP interactions: 3 interactions with chain R Metal complexes: R:Y.108, R:H.160, R:Y.162 FE.163: 5 residues within 4Å: Chain T: Y.108, R.157, H.160, Y.162 Ligands: CAQ.171 3 PLIP interactions: 3 interactions with chain T Metal complexes: T:Y.108, T:H.160, T:Y.162 FE.181: 5 residues within 4Å: Chain V: Y.108, R.157, H.160, Y.162 Ligands: CAQ.186 3 PLIP interactions: 3 interactions with chain V Metal complexes: V:Y.108, V:H.160, V:Y.162 FE.196: 5 residues within 4Å: Chain X: Y.108, R.157, H.160, Y.162 Ligands: CAQ.202 3 PLIP interactions: 3 interactions with chain X Metal complexes: X:Y.108, X:H.160, X:Y.162

10 x CL: CHLORIDE ION(Non-functional Binders)

CL.17: 2 residues within 4Å: Chain B: D.132, S.133 Ligand excluded by PLIP CL.34: 2 residues within 4Å: Chain D: W.149, R.150 Ligand excluded by PLIP CL.51: 3 residues within 4Å: Chain F: W.149, R.150 Ligands: SO4.43 Ligand excluded by PLIP CL.86: 3 residues within 4Å: Chain J: R.114, W.149, R.150 Ligand excluded by PLIP CL.101: 1 residues within 4Å: Chain L: R.150 Ligand excluded by PLIP CL.119: 2 residues within 4Å: Chain N: D.132, S.133 Ligand excluded by PLIP CL.136: 2 residues within 4Å: Chain P: W.149, R.150 Ligand excluded by PLIP CL.153: 3 residues within 4Å: Chain R: W.149, R.150 Ligands: SO4.145 Ligand excluded by PLIP CL.188: 3 residues within 4Å: Chain V: R.114, W.149, R.150 Ligand excluded by PLIP CL.203: 1 residues within 4Å: Chain X: R.150 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Purpero, V.M. et al., Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase. To be Published

Release Date

2011-04-27

Peptides

Protocatechuate 3,4-dioxygenase alpha chain: ACEGIKMOQSUW
Protocatechuate 3,4-dioxygenase beta chain: BDFHJLNPRTVX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

E
C

G
D

I
E

K
F

M
A

O
B

Q
C

S
D

U
E

W
F

B
M

D
N

F
O

H
P

J
Q

L
R

N
M

P
N

R
O

T
P

V
Q

X
R

Protocatechuate 3,4-dioxygenase alpha chain

Protocatechuate 3,4-dioxygenase beta chain

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