SMTL ID : 3mi7.1

An Enhanced Repressor of Human Papillomavirus E2 Protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: T.5, P.7, E.60, R.63, G.81, F.82 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.5, A:T.5, A:R.63, A:R.63 Water bridges: A:T.80, A:T.80 EDO.2: 5 residues within 4Å: Chain A: R.24, H.28, Q.69, V.70, K.71 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.28, A:K.71 EDO.3: 3 residues within 4Å: Chain A: H.40, T.42, G.43 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.40, A:G.43 EDO.4: 7 residues within 4Å: Chain A: A.15, T.38, W.39, H.40, N.45, A.51 Chain B: S.37 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.38, A:H.40, A:N.45, B:S.37 EDO.5: 2 residues within 4Å: Chain A: V.78, T.80 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.80 Water bridges: A:T.80, A:T.80 EDO.6: 3 residues within 4Å: Chain A: S.59, E.60, W.61 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.60, A:W.61 EDO.7: 6 residues within 4Å: Chain B: T.5, P.7, E.60, R.63, G.81, F.82 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:T.5, B:T.5, B:E.60, B:R.63, B:R.63 Water bridges: B:T.80, B:T.80 EDO.8: 5 residues within 4Å: Chain B: R.24, H.28, Q.69, V.70, K.71 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.28, B:K.71 EDO.9: 3 residues within 4Å: Chain B: H.40, T.42, G.43 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.40, B:G.43 EDO.10: 7 residues within 4Å: Chain A: S.37 Chain B: A.15, T.38, W.39, H.40, N.45, A.51 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.37, B:T.38, B:N.45 EDO.11: 2 residues within 4Å: Chain B: V.78, T.80 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.80 Water bridges: B:T.80, B:T.80 EDO.12: 3 residues within 4Å: Chain B: S.59, E.60, W.61 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.60, B:W.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bose, K. et al., Design and characterization of an enhanced repressor of human papillomavirus E2 protein. Faseb J. (2011)

Release Date

2011-04-06

Peptides

Regulatory protein E2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

B
X

Regulatory protein E2