SMTL ID : 3mj5.2 (2 other biounits)

Severe Acute Respiratory Syndrome-Coronavirus Papain-Like Protease Inhibitors: Design, Synthesis, Protein-Ligand X-ray Structure and Biological Evaluation

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.63 Å

Oligo State

monomer

Ligands

1 x GRM: N-(1,3-benzodioxol-5-ylmethyl)-1-[(1R)-1-naphthalen-1-ylethyl]piperidine-4-carboxamide(Non-covalent)

GRM.1: 11 residues within 4Å: Chain A: L.163, G.164, D.165, P.248, P.249, Y.265, N.268, Y.269, Q.270, Y.274, T.302 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:P.248, A:P.249, A:Y.265, A:Y.269, A:Y.269, A:Y.269, A:T.302 Hydrogen bonds: A:Y.269 Salt bridges: A:D.165 pi-Stacking: A:Y.269, A:Y.269

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: C.190, H.192, C.193, C.225, V.226, C.227 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.190, A:C.193, A:C.225

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ghosh, A.K. et al., Severe acute respiratory syndrome coronavirus papain-like novel protease inhibitors: design, synthesis, protein-ligand X-ray structure and biological evaluation. J.Med.Chem. (2010)

Release Date

2010-06-30

Peptides

Replicase polyprotein 1a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Replicase polyprotein 1a

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