SMTL ID : 3mj9.1

Crystal structure of JAML in complex with the stimulatory antibody HL4E10

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-MAN-MAN-FUC.1: 8 residues within 4Å: Chain A: V.29, Q.30, T.32, H.36, N.82, L.105, N.107, S.109 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.29 Hydrogen bonds: A:Q.30, A:T.32

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: N.61, F.80 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.61, A:N.61 NAG.3: 3 residues within 4Å: Chain A: N.71, R.72, Q.89 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:R.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Verdino, P. et al., Molecular insights into gamma delta T cell costimulation by an anti-JAML antibody. Structure (2011)

Release Date

2011-02-23

Peptides

Junctional adhesion molecule-like: A
STIMULATORY HAMSTER ANTIBODY HL4E10 FAB LIGHT CHAIN: B
STIMULATORY HAMSTER ANTIBODY HL4E10 FAB HEAVY CHAIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
L

C
H

Junctional adhesion molecule-like

STIMULATORY HAMSTER ANTIBODY HL4E10 FAB LIGHT CHAIN

STIMULATORY HAMSTER ANTIBODY HL4E10 FAB HEAVY CHAIN

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