SMTL ID : 3mke.1

SHV-1 beta-lactamase complex with LP06

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

2 x MA4: CYCLOHEXYL-HEXYL-BETA-D-MALTOSIDE(Non-covalent)

MA4.1: 13 residues within 4Å: Chain A: I.196, V.199, P.201, I.206, I.220, A.222, V.234, I.236, A.253, G.256, A.257, I.260 Ligands: MA4.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.196, A:V.199, A:I.206, A:I.220, A:A.222, A:V.234, A:I.236 Hydrogen bonds: A:S.1, A:A.257 MA4.2: 7 residues within 4Å: Chain A: L.195, V.199, T.210, R.218, N.249, I.252 Ligands: MA4.1 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.210, A:I.252

1 x CB4: PINACOL[[2-AMINO-ALPHA-(1-CARBOXY-1-METHYLETHOXYIMINO)-4-THIAZOLEACETYL]AMINO]METHANEBORONATE(Covalent)

CB4.3: 16 residues within 4Å: Chain A: M.44, S.45, K.48, D.79, Y.80, S.105, N.107, E.141, L.144, N.145, V.191, K.209, T.210, G.211, A.212, R.218 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.191, A:A.212 Hydrogen bonds: A:S.45, A:S.105, A:S.105, A:N.107, A:N.145, A:N.145, A:A.212, A:A.212 Water bridges: A:R.218 Salt bridges: A:K.209, A:R.218 pi-Stacking: A:Y.80

1 x CZ6: 2-[(~{Z})-[1-(2-azanyl-1,3-thiazol-4-yl)-2-oxidanylidene-2-[[(6~{S})-4,4,6-trimethyl-1,3,2-dioxaborinan-2-yl]methylamino]ethylidene]amino]oxy-2-methyl-propanoic acid(Non-covalent)

CZ6.4: 7 residues within 4Å: Chain A: A.54, R.58, D.63, V.117, G.122, A.125, F.126 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.54, A:R.58, A:D.63, A:A.125, A:F.126 Hydrogen bonds: A:R.58, A:D.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ke, W. et al., Novel Insights into the Mode of Inhibition of Class A SHV-1 {beta}-Lactamases Revealed by Boronic Acid Transition State Inhibitors. Antimicrob.Agents Chemother. (2011)

Release Date

2010-11-24

Peptides

Beta-lactamase SHV-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase SHV-1

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