SMTL ID : 3mkh.1

Podospora anserina Nitroalkane Oxidase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 32 residues within 4Å: Chain A: L.94, L.101, L.132, F.134, S.135, G.139, V.140, A.141, N.142, W.170, A.171, T.172, V.394, I.397, F.398, D.399, G.400, G.401, V.403, G.404, I.405 Chain B: R.301, L.307, R.310, F.313, N.372, A.373, V.374, G.375, I.376, Y.379 Chain D: Q.311 38 PLIP interactions: 10 interactions with chain B, 27 interactions with chain A, 1 interactions with chain D Hydrophobic interactions: B:I.376, B:Y.379, A:L.94, A:W.170, A:W.170, A:V.394, A:F.398 Hydrogen bonds: B:N.372, B:I.376, A:L.132, A:F.134, A:S.135, A:S.135, A:S.135, A:V.140, A:A.141, A:N.142, A:T.172, A:F.398, A:D.399, A:G.400, A:G.401, A:G.404, D:Q.311 Water bridges: B:R.301, B:R.301, B:R.301, B:R.301, B:R.310, A:L.132, A:A.141, A:E.145, A:I.397, A:V.403, A:V.403, A:I.405 Salt bridges: B:R.301 pi-Stacking: A:F.398 FAD.4: 32 residues within 4Å: Chain A: R.301, L.307, R.310, A.312, N.372, A.373, V.374, G.375, I.376, Y.379 Chain B: L.94, L.101, L.132, F.134, S.135, G.139, V.140, A.141, N.142, W.170, A.171, T.172, V.394, I.397, F.398, D.399, G.400, G.401, V.403, G.404, I.405 Chain C: Q.311 34 PLIP interactions: 9 interactions with chain A, 24 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: A:I.376, A:Y.379, B:L.94, B:W.170, B:V.394, B:F.398, B:F.398 Hydrogen bonds: A:N.372, A:I.376, B:L.132, B:F.134, B:S.135, B:S.135, B:S.135, B:V.140, B:A.141, B:N.142, B:T.172, B:T.172, B:F.398, B:D.399, B:G.400, B:G.401, C:Q.311 Water bridges: A:R.301, A:R.301, A:R.301, A:S.377, B:I.397, B:V.403, B:G.404, B:I.405 Salt bridges: A:R.301 pi-Stacking: B:F.398 FAD.6: 32 residues within 4Å: Chain B: Q.311 Chain C: L.94, L.101, L.132, F.134, S.135, G.139, V.140, A.141, N.142, W.170, A.171, T.172, V.394, I.397, F.398, D.399, G.400, G.401, V.403, G.404, I.405 Chain D: R.301, L.307, R.310, F.313, N.372, A.373, V.374, G.375, I.376, Y.379 36 PLIP interactions: 2 interactions with chain B, 24 interactions with chain C, 10 interactions with chain D Hydrogen bonds: B:Q.311, C:L.132, C:F.134, C:S.135, C:S.135, C:S.135, C:V.140, C:A.141, C:N.142, C:T.172, C:I.397, C:F.398, C:D.399, C:G.400, C:G.401, D:N.372, D:I.376 Water bridges: B:Q.311, C:A.141, C:E.145, C:V.403, C:G.404, C:I.405, D:R.301, D:R.301, D:R.301, D:R.301, D:R.310 Hydrophobic interactions: C:L.94, C:W.170, C:V.394, C:F.398, D:I.376, D:Y.379 pi-Stacking: C:F.398 Salt bridges: D:R.301 FAD.8: 31 residues within 4Å: Chain A: Q.311 Chain C: R.301, L.307, R.310, F.313, N.372, A.373, V.374, G.375, I.376, Y.379 Chain D: L.94, L.101, L.132, F.134, S.135, G.139, V.140, A.141, N.142, W.170, A.171, T.172, V.394, I.397, F.398, D.399, G.400, G.401, V.403, G.404 32 PLIP interactions: 23 interactions with chain D, 8 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: D:L.94, D:V.394, D:F.398, D:F.398, C:I.376, C:Y.379 Hydrogen bonds: D:L.132, D:F.134, D:S.135, D:S.135, D:S.135, D:V.140, D:A.141, D:N.142, D:T.172, D:T.172, D:I.397, D:F.398, D:D.399, D:G.400, D:G.401, C:N.372, C:I.376 Water bridges: D:G.139, D:V.403, D:I.405, C:R.301, C:R.301, C:R.310, A:Q.311 pi-Stacking: D:F.398 Salt bridges: C:R.301

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: T.154, R.156, R.190 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.156, A:R.156, A:R.190, A:R.190 Salt bridges: A:R.156, A:R.190 SO4.5: 2 residues within 4Å: Chain B: R.156, R.190 4 PLIP interactions: 4 interactions with chain B Water bridges: B:R.190, B:R.190 Salt bridges: B:R.156, B:R.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tormos, J.R. et al., Identification of a hypothetical protein from Podospora anserina as a nitroalkane oxidase. Biochemistry (2010)

Release Date

2010-06-02

Peptides

NITROALKANE OXIDASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

NITROALKANE OXIDASE