SMTL ID : 3mlb.2 (1 other biounit)

BaNadD in complex with inhibitor 1_02_1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x K: POTASSIUM ION(Non-covalent)

K.1: 4 residues within 4Å: Chain A: T.66, E.67, E.69, F.72 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:F.72 K.4: 6 residues within 4Å: Chain B: Q.42, E.78, R.81, G.83, P.84, S.85 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.78 K.6: 4 residues within 4Å: Chain C: T.66, E.67, E.69, F.72 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:F.72 K.9: 6 residues within 4Å: Chain D: Q.42, E.78, R.81, G.83, P.84, S.85 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:E.78

4 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 5 residues within 4Å: Chain A: Y.86, T.87, W.118 Chain B: K.117 Ligands: LJZ.3 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.87, A:T.87, B:K.117 Water bridges: A:Y.119 FMT.5: 5 residues within 4Å: Chain A: K.117 Chain B: Y.86, T.87, W.118 Ligands: LJZ.3 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.87 FMT.7: 5 residues within 4Å: Chain C: Y.86, T.87, W.118 Chain D: K.117 Ligands: LJZ.8 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:T.87, C:T.87, D:K.117 Water bridges: C:Y.119 FMT.10: 5 residues within 4Å: Chain C: K.117 Chain D: Y.86, T.87, W.118 Ligands: LJZ.8 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:T.87

2 x LJZ: 4,4'-{cyclohexa-2,5-diene-1,4-diylidenebis[(E)methylylidene(E)diazene-2,1-diyl]}bis[N-(2-chlorophenyl)-4-oxobutanamide](Non-covalent)

LJZ.3: 25 residues within 4Å: Chain A: G.10, I.23, T.87, F.105, I.106, I.107, G.108, M.111, Y.114, K.117, W.118 Chain B: G.10, I.23, T.87, F.105, I.106, I.107, G.108, M.111, Y.114, K.117, W.118, V.133 Ligands: FMT.2, FMT.5 17 PLIP interactions: 8 interactions with chain B, 9 interactions with chain A Hydrophobic interactions: B:I.23, B:Y.114, B:W.118, B:V.133, A:I.23, A:I.23, A:I.106, A:Y.114, A:W.118 Hydrogen bonds: B:G.10, B:T.87, B:G.108, A:G.10, A:G.108 pi-Stacking: B:W.118, A:W.118 Water bridges: A:G.10 LJZ.8: 25 residues within 4Å: Chain C: G.10, I.23, T.87, F.105, I.106, I.107, G.108, M.111, Y.114, K.117, W.118 Chain D: G.10, I.23, T.87, F.105, I.106, I.107, G.108, M.111, Y.114, K.117, W.118, V.133 Ligands: FMT.7, FMT.10 17 PLIP interactions: 9 interactions with chain C, 8 interactions with chain D Hydrophobic interactions: C:I.23, C:I.23, C:I.106, C:Y.114, C:W.118, D:I.23, D:Y.114, D:W.118, D:V.133 Hydrogen bonds: C:G.10, C:G.108, D:G.10, D:T.87, D:G.108 Water bridges: C:G.10 pi-Stacking: C:W.118, D:W.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, N. et al., Complexes of bacterial nicotinate mononucleotide adenylyltransferase with inhibitors: implication for structure-based drug design and improvement. J.Med.Chem. (2010)

Release Date

2010-07-28

Peptides

nicotinate-nucleotide adenylyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

nicotinate-nucleotide adenylyltransferase

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