SMTL ID : 3mlp.2 (1 other biounit)

Early B-cell Factor 1 (Ebf1) bound to DNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.134, C.138, C.141, C.147 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.134, A:C.138, A:C.141, A:C.147 ZN.3: 4 residues within 4Å: Chain B: H.134, C.138, C.141, C.147 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.134, B:C.138, B:C.141, B:C.147

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 5 residues within 4Å: Chain A: A.29, H.30, F.31, A.204, V.205 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.31, A:V.205, A:V.205 Salt bridges: A:H.30 CIT.4: 6 residues within 4Å: Chain B: V.13, L.14, D.15, R.98, T.99, E.100 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.14 Hydrogen bonds: B:D.15, B:D.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Treiber, N. et al., Structure of an Ebf1:DNA complex reveals unusual DNA recognition and structural homology with Rel proteins. Genes Dev. (2010)

Release Date

2010-12-01

Peptides

Transcription factor COE1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Transcription factor COE1

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