SMTL ID : 3mmp.3 (2 other biounits)

Structure of the Qb replicase, an RNA-dependent RNA polymerase consisting of viral and host proteins

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-2-2-mer

Ligands

2 x PXN: (2S)-1-[3-{[(2R)-2-hydroxypropyl]oxy}-2,2-bis({[(2R)-2-hydroxypropyl]oxy}methyl)propoxy]propan-2-ol(Non-covalent)

PXN.1: 10 residues within 4Å: Chain A: R.547 Chain B: P.143, V.145, M.148, L.149, K.185, Y.186, A.189, L.190, F.232 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:L.149, B:Y.186, B:L.190 Hydrogen bonds: A:R.547, A:R.547 PXN.2: 10 residues within 4Å: Chain C: R.547 Chain D: P.143, V.145, M.148, L.149, K.185, Y.186, A.189, L.190, S.193 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain C Hydrophobic interactions: D:L.149, D:Y.186, D:L.190 Hydrogen bonds: C:R.547, C:R.547

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kidmose, R.T. et al., Structure of the Qbeta replicase, an RNA-dependent RNA polymerase consisting of viral and host proteins. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-06-09

Peptides

Elongation factor Tu 2, Elongation factor Ts: AC
RNA-directed RNA polymerase beta chain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
G

D
F

Elongation factor Tu 2, Elongation factor Ts

RNA-directed RNA polymerase beta chain

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