SMTL ID : 3mnd.1

Crystallographic analysis of the cystosolic cu/zn Superoxide dismutase from taenia solium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.60, H.68, H.77, D.80, I.133 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.60, A:H.68, A:H.77, A:D.80, A:D.80 ZN.2: 2 residues within 4Å: Chain A: H.64, H.107 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.64, A:H.107, H2O.1 ZN.5: 5 residues within 4Å: Chain B: H.60, H.68, H.77, D.80, I.133 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.60, B:H.68, B:H.77, B:D.80 ZN.6: 3 residues within 4Å: Chain B: H.29, E.31 Ligands: GOL.9 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.29, B:E.31 ZN.7: 2 residues within 4Å: Chain B: H.64, H.107 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.64, B:H.107, H2O.5

2 x CU: COPPER (II) ION(Non-covalent)

CU.3: 4 residues within 4Å: Chain A: H.43, H.45, H.60, H.117 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.43, A:H.45, A:H.60, A:H.117, H2O.1 CU.8: 4 residues within 4Å: Chain B: H.43, H.45, H.60, H.117 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.43, B:H.45, B:H.60, B:H.117, H2O.3

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: G.65, N.67, E.75 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.75 GOL.9: 3 residues within 4Å: Chain B: H.29, E.31 Ligands: ZN.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hernandez-Santoyo, A. et al., Crystal structure of Cu / Zn superoxide dismutase from Taenia solium reveals metal-mediated self-assembly. Febs J. (2011)

Release Date

2011-09-28

Peptides

Superoxide dismutase [Cu-Zn]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Superoxide dismutase [Cu-Zn]