SMTL ID : 3mps.3 (5 other biounits)

Peroxide Bound Oxidized Rubrerythrin from Pyrococcus furiosus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

1 x PEO: HYDROGEN PEROXIDE(Non-functional Binders)

PEO.1: 7 residues within 4Å: Chain A: E.79, E.82, E.113 Chain B: E.18, E.51 Ligands: FE.3, FE.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.82

4 x FE: FE (III) ION(Non-covalent)

FE.2: 5 residues within 4Å: Chain A: C.141, I.143, C.144, C.156, C.159 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.141, A:C.144, A:C.156, A:C.159 FE.3: 6 residues within 4Å: Chain A: E.82, E.113 Chain B: E.18, E.51 Ligands: PEO.1, FE.4 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Metal complexes: B:E.18, B:E.18, B:E.51, A:E.82, A:E.113 FE.4: 6 residues within 4Å: Chain A: E.79, E.113, H.116 Chain B: E.51 Ligands: PEO.1, FE.3 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Metal complexes: A:E.79, A:E.79, A:E.113, A:H.116, B:E.51 FE.5: 4 residues within 4Å: Chain B: C.141, C.144, C.156, C.159 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.141, B:C.144, B:C.156, B:C.159

1 x FEO: MU-OXO-DIIRON(Non-covalent)

FEO.6: 6 residues within 4Å: Chain A: E.18, E.51 Chain B: E.79, E.82, E.113, H.116 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain A, Metal complexes: B:E.79, B:E.82, B:E.113, B:E.113, B:H.116, A:E.18, A:E.51, A:E.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dillard, B.D. et al., A cryo-crystallographic time course for peroxide reduction by rubrerythrin from Pyrococcus furiosus. J.Biol.Inorg.Chem. (2011)

Release Date

2011-06-22

Peptides

Rubrerythrin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
K

Rubrerythrin

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