SMTL ID : 3mpy.1

Structure of EUTM in 2-D protein membrane

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.77 Chain F: K.24 1 PLIP interactions: 1 interactions with chain F Salt bridges: F:K.24 SO4.2: 14 residues within 4Å: Chain A: G.37, G.38 Chain B: G.37, G.38 Chain C: G.38 Chain D: G.38 Chain E: G.38 Chain F: G.37, G.38 Ligands: SO4.4, SO4.6, SO4.8, SO4.10, SO4.12 6 PLIP interactions: 1 interactions with chain E, 1 interactions with chain D, 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain F Hydrogen bonds: E:G.38, D:G.38, A:G.38, C:G.38, B:G.38, F:G.38 SO4.3: 2 residues within 4Å: Chain B: R.77 Chain D: K.24 1 PLIP interactions: 1 interactions with chain D Salt bridges: D:K.24 SO4.4: 14 residues within 4Å: Chain A: G.38 Chain B: G.37, G.38 Chain C: G.37, G.38 Chain D: G.37, G.38 Chain E: G.38 Chain F: G.38 Ligands: SO4.2, SO4.6, SO4.8, SO4.10, SO4.12 6 PLIP interactions: 1 interactions with chain E, 1 interactions with chain D, 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain F Hydrogen bonds: E:G.38, D:G.38, A:G.38, C:G.38, B:G.38, F:G.38 SO4.5: 2 residues within 4Å: Chain C: R.77 Chain E: K.24 1 PLIP interactions: 1 interactions with chain E Salt bridges: E:K.24 SO4.6: 14 residues within 4Å: Chain A: G.37, G.38 Chain B: G.38 Chain C: G.37, G.38 Chain D: G.38 Chain E: G.37, G.38 Chain F: G.38 Ligands: SO4.2, SO4.4, SO4.8, SO4.10, SO4.12 6 PLIP interactions: 1 interactions with chain E, 1 interactions with chain D, 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain F Hydrogen bonds: E:G.38, D:G.38, A:G.38, C:G.38, B:G.38, F:G.38 SO4.7: 2 residues within 4Å: Chain C: K.24 Chain D: R.77 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:K.24 SO4.8: 14 residues within 4Å: Chain A: G.38 Chain B: G.38 Chain C: G.37, G.38 Chain D: G.37, G.38 Chain E: G.37, G.38 Chain F: G.38 Ligands: SO4.2, SO4.4, SO4.6, SO4.10, SO4.12 6 PLIP interactions: 1 interactions with chain E, 1 interactions with chain D, 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain F Hydrogen bonds: E:G.38, D:G.38, A:G.38, C:G.38, B:G.38, F:G.38 SO4.9: 2 residues within 4Å: Chain A: K.24 Chain E: R.77 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.24 SO4.10: 14 residues within 4Å: Chain A: G.37, G.38 Chain B: G.38 Chain C: G.38 Chain D: G.38 Chain E: G.37, G.38 Chain F: G.37, G.38 Ligands: SO4.2, SO4.4, SO4.6, SO4.8, SO4.12 6 PLIP interactions: 1 interactions with chain E, 1 interactions with chain D, 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain F Hydrogen bonds: E:G.38, D:G.38, A:G.38, C:G.38, B:G.38, F:G.38 SO4.11: 2 residues within 4Å: Chain B: K.24 Chain F: R.77 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.24 SO4.12: 14 residues within 4Å: Chain A: G.38 Chain B: G.37, G.38 Chain C: G.38 Chain D: G.37, G.38 Chain E: G.38 Chain F: G.37, G.38 Ligands: SO4.2, SO4.4, SO4.6, SO4.8, SO4.10 6 PLIP interactions: 1 interactions with chain E, 1 interactions with chain D, 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain F Hydrogen bonds: E:G.38, D:G.38, A:G.38, C:G.38, B:G.38, F:G.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takenoya, M. et al., Crystallographic insights into the pore structures and mechanisms of the EutL and EutM shell proteins of the ethanolamine-utilizing microcompartment of Escherichia coli. J.Bacteriol. (2010)

Release Date

2010-09-22

Peptides

Ethanolamine utilization protein eutM: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Ethanolamine utilization protein eutM

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