- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-dimer
- Ligands
- 11 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 7 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
MRD.2: 4 residues within 4Å:- Chain A: G.16
- Chain B: I.9
- Ligands: MPD.7, MRD.18
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:I.9
MRD.5: 1 residues within 4Å:- Chain A: R.89
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.89, A:R.89
MRD.10: 6 residues within 4Å:- Chain A: E.73, N.76, L.77
- Chain B: T.48, M.52
- Ligands: MRD.18
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:E.73, A:L.77, B:T.48
- Hydrogen bonds: A:N.76
MRD.12: 7 residues within 4Å:- Chain A: F.72, E.73, N.76
- Chain B: A.19, Y.22, Q.26, E.45
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:F.72, B:Y.22, B:E.45
- Hydrogen bonds: A:E.73, A:E.73, A:N.76
MRD.14: 9 residues within 4Å:- Chain A: I.9, Q.12
- Chain B: I.53, V.56, A.80, S.83, G.84, L.87
- Ligands: MPD.7
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:Q.12, B:I.53, B:V.56, B:L.87
MRD.16: 6 residues within 4Å:- Chain A: L.18, A.19, Y.22, E.45
- Chain B: F.72, N.76
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:L.18, A:Y.22
- Hydrogen bonds: B:N.76, B:N.76
MRD.18: 5 residues within 4Å:- Chain B: Q.12
- Ligands: MRD.2, MPD.7, MRD.10, MPD.17
No protein-ligand interaction detected (PLIP)- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mueller, G.A. et al., Der p 5 crystal structure provides insight into the group 5 dust mite allergens. J.Biol.Chem. (2010)
- Release Date
- 2010-06-02
- Peptides
- Mite allergen Der p 5: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-dimer
- Ligands
- 11 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 7 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mueller, G.A. et al., Der p 5 crystal structure provides insight into the group 5 dust mite allergens. J.Biol.Chem. (2010)
- Release Date
- 2010-06-02
- Peptides
- Mite allergen Der p 5: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B