SMTL ID : 3mqd.1

Crystal structure of beta-ketoacyl synthase from brucella melitensis with FOL 0758, (1-methyl-1h-indazol-3-yl) methanol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

homo-dimer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: N.315, P.316, E.363, S.409, N.410 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.315, A:N.410 Water bridges: A:K.349 NA.2: 2 residues within 4Å: Chain A: L.304, V.307 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.307 NA.5: 5 residues within 4Å: Chain B: N.315, P.316, E.363, S.409, N.410 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.409, B:N.410 Water bridges: B:K.349 NA.6: 2 residues within 4Å: Chain B: L.304, V.307 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.304

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: D.287, M.288 Chain B: R.84, F.88, T.167 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain A: R.84, F.88, T.167 Chain B: D.287, M.288 Ligand excluded by PLIP

2 x 3MQ: (5-thiophen-2-ylisoxazol-3-yl)methanol(Non-covalent)

3MQ.4: 15 residues within 4Å: Chain A: G.126, G.127, P.128, T.130, A.181, C.182, E.210, L.216, L.219, F.220, L.356 Chain B: I.133, V.153, A.156, M.157 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:V.153, A:A.181, A:L.216 pi-Stacking: A:F.220 3MQ.8: 15 residues within 4Å: Chain A: I.133, V.153, A.156, M.157 Chain B: G.126, G.127, P.128, T.130, A.181, C.182, E.210, L.216, L.219, F.220, L.356 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:V.153, B:A.181, B:L.216 pi-Stacking: B:F.220

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patterson, E.I. et al., Structural characterization of beta-ketoacyl ACP synthase I bound to platencin and fragment screening molecules at two substrate binding sites. Proteins (2020)

Release Date

2010-06-09

Peptides

Beta-ketoacyl synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Beta-ketoacyl synthase

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