SMTL ID : 3msc.1

Glycogen phosphorylase complexed with 2-nitrobenzaldehyde-4-(beta-D-glucopyranosyl)-thiosemicarbazone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

4 x 24S: N-({(2Z)-2-[(2-nitrophenyl)methylidene]hydrazino}carbonothioyl)-beta-D-glucopyranosylamine(Non-covalent)

24S.1: 19 residues within 4Å: Chain A: E.88, N.133, G.135, L.136, L.139, N.282, D.283, N.284, F.285, R.292, H.341, H.377, V.455, N.484, Y.573, E.672, A.673, S.674, G.675 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:N.282, A:N.284, A:N.284, A:N.284, A:H.377, A:N.484, A:E.672, A:E.672, A:S.674, A:S.674, A:G.675 Water bridges: A:A.673, A:A.673, A:T.676 pi-Stacking: A:H.341 24S.2: 17 residues within 4Å: Chain A: R.60, V.64, W.67, P.188, W.189, E.190, K.191, A.192, D.227, P.229 Chain B: F.37, T.38, L.39, V.40, H.57, R.60 Ligands: 24S.4 13 PLIP interactions: 7 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:R.60, A:V.64, B:V.40 Hydrogen bonds: A:E.190, A:K.191, B:H.57, B:R.60 Water bridges: A:R.60, A:R.60, B:T.38, B:R.60, B:R.60 pi-Cation interactions: A:R.60 24S.3: 19 residues within 4Å: Chain B: E.88, N.133, G.135, L.136, L.139, N.282, D.283, N.284, F.285, R.292, H.341, H.377, V.455, N.484, Y.573, E.672, A.673, S.674, G.675 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:N.282, B:N.284, B:N.284, B:N.284, B:H.377, B:H.377, B:N.484, B:E.672, B:S.674, B:S.674, B:G.675 Water bridges: B:A.673, B:A.673, B:T.676 pi-Stacking: B:H.341 24S.4: 17 residues within 4Å: Chain A: F.37, T.38, L.39, V.40, H.57, R.60 Chain B: R.60, V.64, W.67, P.188, W.189, E.190, K.191, A.192, D.227, P.229 Ligands: 24S.2 13 PLIP interactions: 6 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:V.40, B:R.60, B:V.64 Hydrogen bonds: A:H.57, A:R.60, B:E.190, B:K.191 Water bridges: A:T.38, A:R.60, A:R.60, B:R.60, B:R.60 pi-Cation interactions: B:R.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alexacou, K.M. et al., The binding of beta-d-glucopyranosyl-thiosemicarbazone derivatives to glycogen phosphorylase: A new class of inhibitors. Bioorg.Med.Chem. (2010)

Release Date

2011-03-16

Peptides

Glycogen phosphorylase, muscle form: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycogen phosphorylase, muscle form

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