- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 3 residues within 4Å:- Chain A: N.18, E.46
- Ligands: PIF.3
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:E.46, H2O.3, H2O.3, H2O.3
MG.8: 3 residues within 4Å:- Chain B: N.18, E.46
- Ligands: PIF.9
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:E.46, H2O.12, H2O.12, H2O.12
MG.14: 3 residues within 4Å:- Chain C: N.18, E.46
- Ligands: PIF.15
4 PLIP interactions:1 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:E.46, H2O.21, H2O.21, H2O.21
- 3 x PIF: (2R)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-tetrahydroxy-4-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate(Non-covalent)
PIF.3: 17 residues within 4Å:- Chain A: E.46, L.49, K.51, F.54, I.116, N.122, K.123, H.143, A.146, H.147, Y.245, K.246, K.259, R.261
- Chain B: R.119, M.120
- Ligands: MG.2
19 PLIP interactions:19 interactions with chain A- Hydrophobic interactions: A:K.51, A:I.116, A:I.116
- Hydrogen bonds: A:E.46, A:N.122, A:K.123, A:K.123, A:H.147, A:Y.245
- Water bridges: A:E.46, A:H.147, A:R.194, A:K.246, A:D.291, A:D.291
- Salt bridges: A:K.123, A:K.246, A:K.259, A:R.261
PIF.9: 17 residues within 4Å:- Chain B: E.46, L.49, K.51, F.54, I.116, N.122, K.123, H.143, A.146, H.147, Y.245, K.246, K.259, R.261
- Chain C: R.119, M.120
- Ligands: MG.8
17 PLIP interactions:17 interactions with chain B- Hydrophobic interactions: B:K.51, B:I.116, B:I.116
- Hydrogen bonds: B:N.122, B:K.123, B:K.123, B:H.147
- Water bridges: B:E.46, B:H.147, B:R.194, B:K.246, B:D.291, B:D.291
- Salt bridges: B:K.123, B:K.246, B:K.259, B:R.261
PIF.15: 17 residues within 4Å:- Chain A: R.119, M.120
- Chain C: E.46, L.49, K.51, F.54, I.116, N.122, K.123, H.143, A.146, H.147, Y.245, K.246, K.259, R.261
- Ligands: MG.14
19 PLIP interactions:19 interactions with chain C- Hydrophobic interactions: C:K.51, C:I.116, C:I.116
- Hydrogen bonds: C:E.46, C:N.122, C:K.123, C:K.123, C:H.147, C:Y.245
- Water bridges: C:E.46, C:H.147, C:R.194, C:K.246, C:D.291, C:D.291
- Salt bridges: C:K.123, C:K.246, C:K.259, C:R.261
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 5 residues within 4Å:- Chain A: S.50, K.51, E.52
- Chain B: R.119, R.164
7 PLIP interactions:3 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:R.164, A:K.51, A:E.52
- Water bridges: B:G.113, A:K.51
- Salt bridges: B:R.119, A:K.51
SO4.10: 5 residues within 4Å:- Chain B: S.50, K.51, E.52
- Chain C: R.119, R.164
7 PLIP interactions:3 interactions with chain C, 4 interactions with chain B- Hydrogen bonds: C:R.164, B:K.51, B:E.52
- Water bridges: C:G.113, B:K.51
- Salt bridges: C:R.119, B:K.51
SO4.16: 5 residues within 4Å:- Chain A: R.119, R.164
- Chain C: S.50, K.51, E.52
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain C- Hydrogen bonds: A:R.164, C:K.51, C:E.52
- Water bridges: A:G.113, C:K.51
- Salt bridges: A:R.119, C:K.51
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tresaugues, L. et al., Structural basis for phosphoinositide substrate recognition, catalysis, and membrane interactions in human inositol polyphosphate 5-phosphatases. Structure (2014)
- Release Date
- 2010-06-30
- Peptides
- Type II inositol-1,4,5-trisphosphate 5-phosphatase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 3 x PIF: (2R)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-tetrahydroxy-4-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate(Non-covalent)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tresaugues, L. et al., Structural basis for phosphoinositide substrate recognition, catalysis, and membrane interactions in human inositol polyphosphate 5-phosphatases. Structure (2014)
- Release Date
- 2010-06-30
- Peptides
- Type II inositol-1,4,5-trisphosphate 5-phosphatase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A