SMTL ID : 3mur.1

Crystal Structure of the C92U mutant c-di-GMP riboswith bound to c-di-GMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x C2E: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)(Non-functional Binders)

C2E.1: 14 residues within 4Å: Chain B: G.7, A.9, C.10, A.11, G.12, G.13, G.14, C.39, A.40, A.41, A.42, U.86, C.87 Ligands: MG.2 No protein-ligand interaction detected (PLIP)

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 2 residues within 4Å: Chain B: G.13 Ligands: C2E.1 No protein-ligand interaction detected (PLIP) MG.3: 2 residues within 4Å: Chain B: G.50, U.75 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, K.D. et al., Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch . Biochemistry (2010)

Release Date

2010-08-25

Peptides

U1 small nuclear ribonucleoprotein A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

U1 small nuclear ribonucleoprotein A

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