- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-10-mer
- Ligands
- 15 x NA: SODIUM ION(Non-functional Binders)
- 11 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.3: 8 residues within 4Å:- Chain A: G.23, D.24, Q.140
- Chain I: P.34, S.37, I.38, F.113, Y.116
4 PLIP interactions:1 interactions with chain I, 3 interactions with chain A- Water bridges: I:S.37, A:Q.25, A:Q.140
- Hydrogen bonds: A:Q.140
PGE.7: 7 residues within 4Å:- Chain B: H.22, G.23, D.24
- Chain C: P.34, I.38, F.113, Y.116
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:S.37
- Water bridges: C:K.120, B:Q.140
PGE.10: 9 residues within 4Å:- Chain C: G.23, D.24
- Chain F: P.34, S.37, I.38, F.113, Y.116, K.120
- Ligands: PGE.11
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:D.24
- Water bridges: C:Q.140
PGE.11: 9 residues within 4Å:- Chain C: D.24, Q.25, N.41, N.121, A.122, Y.123
- Chain F: S.37, K.40
- Ligands: PGE.10
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain F- Hydrogen bonds: C:D.24, C:Q.25, C:Y.123, F:S.37
PGE.15: 9 residues within 4Å:- Chain D: H.22, G.23, D.24
- Chain E: P.34, S.37, I.38, F.113, Y.116, K.120
1 PLIP interactions:1 interactions with chain D- Water bridges: D:Q.140
PGE.16: 9 residues within 4Å:- Chain B: S.37, I.38, F.113, Y.116
- Chain E: H.22, G.23, D.24, Q.25, Q.140
No protein-ligand interaction detected (PLIP)PGE.20: 6 residues within 4Å:- Chain C: T.67, Y.68, F.145
- Chain F: P.80, G.81, D.82
1 PLIP interactions:1 interactions with chain F- Water bridges: F:Q.133
PGE.23: 9 residues within 4Å:- Chain A: P.34, S.37, I.38, F.113, Y.116, K.120
- Chain G: G.23, D.24, Q.140
3 PLIP interactions:3 interactions with chain G- Hydrogen bonds: G:D.24, G:Q.140
- Water bridges: G:Q.140
PGE.27: 7 residues within 4Å:- Chain H: S.37, I.38, F.113, K.120
- Chain I: G.23, D.24, N.121
2 PLIP interactions:2 interactions with chain I- Hydrogen bonds: I:N.121
- Water bridges: I:Q.140
PGE.31: 9 residues within 4Å:- Chain G: S.37, K.40
- Chain J: G.23, D.24, Q.25, N.121, A.122, Y.123
- Ligands: PGE.32
4 PLIP interactions:4 interactions with chain J- Hydrogen bonds: J:D.24, J:Q.25, J:Y.123
- Water bridges: J:N.41
PGE.32: 7 residues within 4Å:- Chain G: S.37, I.38, F.113, K.120
- Chain J: G.23, D.24
- Ligands: PGE.31
2 PLIP interactions:1 interactions with chain G, 1 interactions with chain J- Hydrogen bonds: G:S.37
- Water bridges: J:Q.140
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 11 residues within 4Å:- Chain A: D.30, N.32, M.76, R.112, Y.116, Q.133, Y.134, N.136
- Chain G: H.22, V.143
- Ligands: NA.2
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain G- Hydrogen bonds: A:D.30, A:Y.116, A:Q.133, A:Y.134, G:H.22
GOL.8: 10 residues within 4Å:- Chain B: D.30, N.32, M.76, R.112, Y.116, Q.133, Y.134
- Chain E: H.22, V.143
- Ligands: NA.6
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:D.30, B:Y.116, B:Y.116, B:Q.133, B:Y.134
GOL.17: 10 residues within 4Å:- Chain D: H.22, V.143
- Chain E: D.30, M.76, R.112, Y.116, Q.133, Y.134, N.136
- Ligands: NA.14
5 PLIP interactions:5 interactions with chain E- Hydrogen bonds: E:D.30, E:Y.116, E:Y.116, E:Q.133, E:Y.134
GOL.21: 7 residues within 4Å:- Chain C: H.22, V.143
- Chain F: D.30, M.76, Q.133, Y.134
- Ligands: NA.19
5 PLIP interactions:4 interactions with chain F, 1 interactions with chain C- Hydrogen bonds: F:D.30, F:Q.133, F:Y.134, F:Y.134, C:H.22
GOL.24: 8 residues within 4Å:- Chain G: D.30, N.32, F.33, Q.133, Y.134, N.136
- Chain J: H.22, V.143
5 PLIP interactions:4 interactions with chain G, 1 interactions with chain J- Hydrogen bonds: G:D.30, G:Q.133, G:Y.134, G:N.136, J:H.22
GOL.28: 10 residues within 4Å:- Chain H: D.30, M.76, R.112, Y.116, Q.133, Y.134, N.136
- Chain I: H.22, V.143
- Ligands: NA.26
6 PLIP interactions:5 interactions with chain H, 1 interactions with chain I- Hydrogen bonds: H:D.30, H:Y.116, H:Q.133, H:Y.134, H:N.136, I:H.22
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stein, A.J. et al., The Crystal Structure of FucU from Bifidobacterium longum to 1.65A. To be Published
- Release Date
- 2010-05-12
- Peptides
- protein FucU: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
J
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-10-mer
- Ligands
- 15 x NA: SODIUM ION(Non-functional Binders)
- 11 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stein, A.J. et al., The Crystal Structure of FucU from Bifidobacterium longum to 1.65A. To be Published
- Release Date
- 2010-05-12
- Peptides
- protein FucU: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
J