SMTL ID : 3mvu.1

Crystal structure of a TenA family transcription regulator (TM1040_3656) from SILICIBACTER SP. TM1040 at 1.80 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x IMD: IMIDAZOLE(Non-covalent)

IMD.1: 8 residues within 4Å: Chain A: D.50, F.53, Y.118, C.141, Y.145, E.216, F.219 Ligands: EDO.12 2 PLIP interactions: 2 interactions with chain A pi-Stacking: A:F.53, A:F.219 IMD.15: 8 residues within 4Å: Chain B: D.50, F.53, Y.118, C.141, Y.145, E.216, F.219 Ligands: EDO.26 2 PLIP interactions: 2 interactions with chain B pi-Stacking: B:F.53, B:F.219 IMD.29: 8 residues within 4Å: Chain C: D.50, F.53, Y.118, C.141, Y.145, E.216, F.219 Ligands: EDO.40 3 PLIP interactions: 3 interactions with chain C Water bridges: C:Y.145 pi-Stacking: C:F.53, C:F.219 IMD.43: 8 residues within 4Å: Chain D: D.50, F.53, Y.118, C.141, Y.145, E.216, F.219 Ligands: EDO.54 3 PLIP interactions: 3 interactions with chain D Water bridges: D:Y.145 pi-Stacking: D:F.53, D:F.219

48 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: S.72, E.73, A.76, T.182, L.183, D.186 Ligand excluded by PLIP EDO.3: 7 residues within 4Å: Chain A: R.59 Chain B: V.66, K.67, S.68, E.69 Chain C: R.204 Ligands: EDO.38 Ligand excluded by PLIP EDO.4: 7 residues within 4Å: Chain A: Q.207, H.210, T.211, E.214 Chain C: R.110 Ligands: EDO.5, EDO.9 Ligand excluded by PLIP EDO.5: 7 residues within 4Å: Chain A: T.211, E.214, L.215 Chain C: R.110, A.113 Ligands: EDO.4, EDO.36 Ligand excluded by PLIP EDO.6: 6 residues within 4Å: Chain A: K.8, L.12, A.194, E.195, F.196, T.197 Ligand excluded by PLIP EDO.7: 6 residues within 4Å: Chain A: E.69, R.190, R.191 Chain D: P.200, R.201, R.204 Ligand excluded by PLIP EDO.8: 5 residues within 4Å: Chain A: R.110, R.112, A.113, E.114 Ligands: EDO.33 Ligand excluded by PLIP EDO.9: 5 residues within 4Å: Chain A: E.16, C.206, Q.207, H.210 Ligands: EDO.4 Ligand excluded by PLIP EDO.10: 6 residues within 4Å: Chain A: A.125, G.129, D.133, R.204, T.208 Ligands: EDO.31 Ligand excluded by PLIP EDO.11: 6 residues within 4Å: Chain A: A.113, E.114, A.117 Chain C: A.113, E.114 Ligands: EDO.39 Ligand excluded by PLIP EDO.12: 6 residues within 4Å: Chain A: E.88, C.141, Y.145, Y.168, Y.173 Ligands: IMD.1 Ligand excluded by PLIP EDO.13: 1 residues within 4Å: Chain A: E.16 Ligand excluded by PLIP EDO.16: 6 residues within 4Å: Chain B: S.72, E.73, A.76, T.182, L.183, D.186 Ligand excluded by PLIP EDO.17: 7 residues within 4Å: Chain A: V.66, K.67, S.68, E.69 Chain B: R.59 Chain D: R.204 Ligands: EDO.52 Ligand excluded by PLIP EDO.18: 7 residues within 4Å: Chain B: Q.207, H.210, T.211, E.214 Chain D: R.110 Ligands: EDO.19, EDO.23 Ligand excluded by PLIP EDO.19: 7 residues within 4Å: Chain B: T.211, E.214, L.215 Chain D: R.110, A.113 Ligands: EDO.18, EDO.50 Ligand excluded by PLIP EDO.20: 6 residues within 4Å: Chain B: K.8, L.12, A.194, E.195, F.196, T.197 Ligand excluded by PLIP EDO.21: 6 residues within 4Å: Chain B: E.69, R.190, R.191 Chain C: P.200, R.201, R.204 Ligand excluded by PLIP EDO.22: 5 residues within 4Å: Chain B: R.110, R.112, A.113, E.114 Ligands: EDO.47 Ligand excluded by PLIP EDO.23: 5 residues within 4Å: Chain B: E.16, C.206, Q.207, H.210 Ligands: EDO.18 Ligand excluded by PLIP EDO.24: 6 residues within 4Å: Chain B: A.125, G.129, D.133, R.204, T.208 Ligands: EDO.45 Ligand excluded by PLIP EDO.25: 6 residues within 4Å: Chain B: A.113, E.114, A.117 Chain D: A.113, E.114 Ligands: EDO.53 Ligand excluded by PLIP EDO.26: 6 residues within 4Å: Chain B: E.88, C.141, Y.145, Y.168, Y.173 Ligands: IMD.15 Ligand excluded by PLIP EDO.27: 1 residues within 4Å: Chain B: E.16 Ligand excluded by PLIP EDO.30: 6 residues within 4Å: Chain C: S.72, E.73, A.76, T.182, L.183, D.186 Ligand excluded by PLIP EDO.31: 7 residues within 4Å: Chain A: R.204 Chain C: R.59 Chain D: V.66, K.67, S.68, E.69 Ligands: EDO.10 Ligand excluded by PLIP EDO.32: 7 residues within 4Å: Chain A: R.110 Chain C: Q.207, H.210, T.211, E.214 Ligands: EDO.33, EDO.37 Ligand excluded by PLIP EDO.33: 7 residues within 4Å: Chain A: R.110, A.113 Chain C: T.211, E.214, L.215 Ligands: EDO.8, EDO.32 Ligand excluded by PLIP EDO.34: 6 residues within 4Å: Chain C: K.8, L.12, A.194, E.195, F.196, T.197 Ligand excluded by PLIP EDO.35: 6 residues within 4Å: Chain B: P.200, R.201, R.204 Chain C: E.69, R.190, R.191 Ligand excluded by PLIP EDO.36: 5 residues within 4Å: Chain C: R.110, R.112, A.113, E.114 Ligands: EDO.5 Ligand excluded by PLIP EDO.37: 5 residues within 4Å: Chain C: E.16, C.206, Q.207, H.210 Ligands: EDO.32 Ligand excluded by PLIP EDO.38: 6 residues within 4Å: Chain C: A.125, G.129, D.133, R.204, T.208 Ligands: EDO.3 Ligand excluded by PLIP EDO.39: 6 residues within 4Å: Chain A: A.113, E.114 Chain C: A.113, E.114, A.117 Ligands: EDO.11 Ligand excluded by PLIP EDO.40: 6 residues within 4Å: Chain C: E.88, C.141, Y.145, Y.168, Y.173 Ligands: IMD.29 Ligand excluded by PLIP EDO.41: 1 residues within 4Å: Chain C: E.16 Ligand excluded by PLIP EDO.44: 6 residues within 4Å: Chain D: S.72, E.73, A.76, T.182, L.183, D.186 Ligand excluded by PLIP EDO.45: 7 residues within 4Å: Chain B: R.204 Chain C: V.66, K.67, S.68, E.69 Chain D: R.59 Ligands: EDO.24 Ligand excluded by PLIP EDO.46: 7 residues within 4Å: Chain B: R.110 Chain D: Q.207, H.210, T.211, E.214 Ligands: EDO.47, EDO.51 Ligand excluded by PLIP EDO.47: 7 residues within 4Å: Chain B: R.110, A.113 Chain D: T.211, E.214, L.215 Ligands: EDO.22, EDO.46 Ligand excluded by PLIP EDO.48: 6 residues within 4Å: Chain D: K.8, L.12, A.194, E.195, F.196, T.197 Ligand excluded by PLIP EDO.49: 6 residues within 4Å: Chain A: P.200, R.201, R.204 Chain D: E.69, R.190, R.191 Ligand excluded by PLIP EDO.50: 5 residues within 4Å: Chain D: R.110, R.112, A.113, E.114 Ligands: EDO.19 Ligand excluded by PLIP EDO.51: 5 residues within 4Å: Chain D: E.16, C.206, Q.207, H.210 Ligands: EDO.46 Ligand excluded by PLIP EDO.52: 6 residues within 4Å: Chain D: A.125, G.129, D.133, R.204, T.208 Ligands: EDO.17 Ligand excluded by PLIP EDO.53: 6 residues within 4Å: Chain B: A.113, E.114 Chain D: A.113, E.114, A.117 Ligands: EDO.25 Ligand excluded by PLIP EDO.54: 6 residues within 4Å: Chain D: E.88, C.141, Y.145, Y.168, Y.173 Ligands: IMD.43 Ligand excluded by PLIP EDO.55: 1 residues within 4Å: Chain D: E.16 Ligand excluded by PLIP

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.14: 2 residues within 4Å: Chain A: H.45, Q.49 Ligand excluded by PLIP CL.28: 2 residues within 4Å: Chain B: H.45, Q.49 Ligand excluded by PLIP CL.42: 2 residues within 4Å: Chain C: H.45, Q.49 Ligand excluded by PLIP CL.56: 2 residues within 4Å: Chain D: H.45, Q.49 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a TenA family transcription regulator (TM1040_3656) from SILICIBACTER SP. TM1040 at 1.80 A resolution. To be published

Release Date

2010-05-26

Peptides

TenA family transcriptional regulator: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

TenA family transcriptional regulator