SMTL ID : 3mxt.1

Crystal Structure of Pantoate-Beta-alanine Ligase from Campylobacter jejuni

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: M.33, Q.63, V.130, V.133, L.134, Q.155 Ligands: FMT.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.63, A:Q.155 Water bridges: A:D.152 GOL.5: 9 residues within 4Å: Chain A: P.31, H.37, H.40, L.43, G.149, K.151, K.186 Ligands: CL.7, FMT.8 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.31, A:H.37, A:G.149 Water bridges: A:G.149, A:K.151, A:D.152 GOL.9: 7 residues within 4Å: Chain B: M.33, Q.63, V.130, V.133, L.134, Q.155 Ligands: FMT.16 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.63, B:Q.155 Water bridges: B:D.152 GOL.13: 9 residues within 4Å: Chain B: P.31, H.37, H.40, L.43, G.149, K.151, K.186 Ligands: CL.15, FMT.16 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:P.31, B:H.37, B:G.149 Water bridges: B:G.149, B:K.151, B:D.152

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: N.142, D.169 No protein-ligand interaction detected (PLIP) MG.10: 2 residues within 4Å: Chain B: N.142, D.169 No protein-ligand interaction detected (PLIP)

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 9 residues within 4Å: Chain A: F.35, H.37, R.79, E.180, S.187, S.188, N.190, V.191 Ligands: FMT.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.187 Water bridges: A:R.79, A:N.190 Salt bridges: A:R.79 SO4.11: 9 residues within 4Å: Chain B: F.35, H.37, R.79, E.180, S.187, S.188, N.190, V.191 Ligands: FMT.14 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.187 Water bridges: B:R.79, B:N.190 Salt bridges: B:R.79

6 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 5 residues within 4Å: Chain A: M.33, Q.63, R.123, H.126, R.189 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.63, A:R.123, A:R.123, A:R.189, A:R.189 Water bridges: A:Q.155 FMT.6: 5 residues within 4Å: Chain A: H.37, D.38, R.79, K.186 Ligands: SO4.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.38, A:R.79 FMT.8: 6 residues within 4Å: Chain A: T.32, M.33, H.40 Ligands: GOL.1, GOL.5, CL.7 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.34, A:H.40 FMT.12: 5 residues within 4Å: Chain B: M.33, Q.63, R.123, H.126, R.189 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.63, B:R.123, B:R.123, B:R.189, B:R.189 Water bridges: B:Q.155 FMT.14: 5 residues within 4Å: Chain B: H.37, D.38, R.79, K.186 Ligands: SO4.11 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.38, B:R.79 FMT.16: 6 residues within 4Å: Chain B: T.32, M.33, H.40 Ligands: GOL.9, GOL.13, CL.15 2 PLIP interactions: 2 interactions with chain B Water bridges: B:G.34, B:H.40

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 7 residues within 4Å: Chain A: H.37, H.40, Y.73, S.187, S.188 Ligands: GOL.5, FMT.8 Ligand excluded by PLIP CL.15: 7 residues within 4Å: Chain B: H.37, H.40, Y.73, S.187, S.188 Ligands: GOL.13, FMT.16 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Pantoate-Beta-alanine Ligase from Campylobacter jejuni. To be Published

Release Date

2010-06-16

Peptides

Pantothenate synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Pantothenate synthetase

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